Snrnp35 (small nuclear ribonucleoprotein U11/U12 subunit 35) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Snrnp35 (small nuclear ribonucleoprotein U11/U12 subunit 35) Chinchilla lanigera
Analyze
Symbol: Snrnp35
Name: small nuclear ribonucleoprotein U11/U12 subunit 35
RGD ID: 8810622
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog); U12-type spliceosomal complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small nuclear ribonucleoprotein 35kDa (U11/U12)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,457,250 - 5,462,225 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,457,159 - 5,461,694 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Snrnp35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,457,250 - 5,462,225 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,457,159 - 5,461,694 (-)NCBIChiLan1.0ChiLan1.0
SNRNP35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812123,458,139 - 123,473,154 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12123,458,088 - 123,473,154 (+)EnsemblGRCh38hg38GRCh38
GRCh3712123,942,686 - 123,957,701 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612122,508,604 - 122,516,894 (+)NCBINCBI36Build 36hg18NCBI36
Celera12123,538,515 - 123,546,844 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12120,904,066 - 120,912,393 (+)NCBIHuRef
CHM1_112123,757,397 - 123,765,683 (+)NCBICHM1_1
T2T-CHM13v2.012123,457,038 - 123,472,057 (+)NCBIT2T-CHM13v2.0
Snrnp35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,621,099 - 124,631,649 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,621,197 - 124,629,187 (+)EnsemblGRCm39 Ensembl
GRCm385124,483,081 - 124,493,586 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,483,134 - 124,491,124 (+)EnsemblGRCm38mm10GRCm38
MGSCv375124,933,164 - 124,941,131 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365124,743,773 - 124,751,740 (+)NCBIMGSCv36mm8
Celera5121,556,494 - 121,564,461 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.61NCBI
Snrnp35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,773,052 - 37,781,635 (-)NCBIGRCr8
mRatBN7.21232,112,032 - 32,119,829 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,110,993 - 32,122,660 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,290,899 - 33,298,200 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01233,902,230 - 33,909,531 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01232,954,096 - 32,961,397 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,531,082 - 37,538,823 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,531,095 - 37,538,403 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,401,200 - 39,408,927 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,224,503 - 33,231,813 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,087,892 - 33,095,201 (-)NCBI
Celera1233,802,231 - 33,809,541 (-)NCBICelera
Cytogenetic Map12q15NCBI
SNRNP35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210131,497,764 - 131,551,377 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112131,494,141 - 131,547,753 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012121,053,065 - 121,061,851 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112125,280,601 - 125,290,266 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12125,282,666 - 125,290,266 (+)Ensemblpanpan1.1panPan2
Snrnp35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,176,966 - 158,181,909 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,297,550 - 1,302,283 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365581,297,517 - 1,302,410 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRNP35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,471,429 - 29,477,011 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,471,674 - 29,477,051 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,166,493 - 31,169,705 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNRNP35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,789,920 - 118,798,820 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,797,972 - 118,798,712 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037126,483,931 - 126,493,340 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrnp35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474723,328,217 - 23,332,765 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474723,328,492 - 23,332,771 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000014999   ⟹   ENSCLAP00000014840
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554825,457,250 - 5,462,225 (-)Ensembl
RefSeq Acc Id: XM_005403037   ⟹   XP_005403094
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554825,457,159 - 5,461,694 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005403094 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000014840.1
Reference Protein Sequences
RefSeq Acc Id: XP_005403094   ⟸   XM_005403037
- UniProtKB: A0A8C2VHP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000014840   ⟸   ENSCLAT00000014999
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010232 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014999.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  snRNP35_RRM UniProtKB/TrEMBL
NCBI Gene Snrnp35 ENTREZGENE
PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD UniProtKB/TrEMBL
  U11_U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 35 KDA PROTEIN UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8C2VHP4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Snrnp35  small nuclear ribonucleoprotein U11/U12 subunit 35    small nuclear ribonucleoprotein 35kDa (U11/U12)  Symbol and/or name change 5135510 APPROVED