Gal (galanin and GMAP prepropeptide) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Gal (galanin and GMAP prepropeptide) Chinchilla lanigera
Analyze
Symbol: Gal
Name: galanin and GMAP prepropeptide
RGD ID: 8810068
Description: ENCODES a protein that exhibits galanin receptor activity (ortholog); neuropeptide hormone activity (ortholog); type 1 galanin receptor binding (ortholog); INVOLVED IN feeding behavior (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of lymphocyte proliferation (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); brain ischemia (ortholog); depressive disorder (ortholog); FOUND IN neuron projection terminus; perikaryon; extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: galanin peptides; galanin/GMAP prepropeptide
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542217,202,946 - 17,207,948 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542217,202,770 - 17,207,948 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. Morphology and immunohistochemical characteristics of the pterygopalatine ganglion in the chinchilla (Chinchilla laniger, Molina). Szczurkowski A, etal., Pol J Vet Sci. 2013;16(2):359-68.
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gal
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542217,202,946 - 17,207,948 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542217,202,770 - 17,207,948 (-)NCBIChiLan1.0ChiLan1.0
GAL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381168,684,544 - 68,691,175 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1168,683,779 - 68,691,175 (+)EnsemblGRCh38hg38GRCh38
GRCh371168,452,012 - 68,458,643 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361168,208,559 - 68,215,219 (+)NCBINCBI36Build 36hg18NCBI36
Build 341168,208,610 - 68,215,219NCBI
Celera1165,788,525 - 65,795,257 (+)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1164,788,371 - 64,795,031 (+)NCBIHuRef
CHM1_11168,335,752 - 68,342,412 (+)NCBICHM1_1
T2T-CHM13v2.01168,690,664 - 68,697,295 (+)NCBIT2T-CHM13v2.0
Gal
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,459,915 - 3,464,544 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,459,915 - 3,464,544 (-)EnsemblGRCm39 Ensembl
GRCm38193,409,915 - 3,414,544 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,409,915 - 3,414,544 (-)EnsemblGRCm38mm10GRCm38
MGSCv37193,409,917 - 3,414,457 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36193,409,917 - 3,414,457 (-)NCBIMGSCv36mm8
Celera193,279,401 - 3,283,920 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.16NCBI
Gal
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,079,709 - 210,084,572 (-)NCBIGRCr8
mRatBN7.21200,650,439 - 200,655,302 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1200,650,439 - 200,654,959 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1209,023,646 - 209,028,521 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01216,112,399 - 216,117,262 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01208,786,607 - 208,791,470 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01218,653,059 - 218,657,922 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1218,652,917 - 218,657,925 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,520,966 - 225,525,829 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41205,936,352 - 205,941,215 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11206,089,804 - 206,094,668 (-)NCBI
Celera1198,205,890 - 198,210,753 (-)NCBICelera
Cytogenetic Map1q42NCBI
GAL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2969,636,630 - 69,646,600 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11170,679,823 - 70,689,785 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01163,770,758 - 63,777,421 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11167,075,104 - 67,081,696 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1167,075,547 - 67,081,696 (+)Ensemblpanpan1.1panPan2
GAL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11849,240,437 - 49,246,543 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1849,240,437 - 49,246,950 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1847,849,939 - 47,855,743 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01850,155,635 - 50,161,742 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1850,155,635 - 50,161,523 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11849,376,255 - 49,382,059 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01848,950,015 - 48,955,820 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01849,743,208 - 49,749,012 (-)NCBIUU_Cfam_GSD_1.0
Gal
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,120,761 - 5,125,269 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365991,563,270 - 1,566,158 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365991,563,270 - 1,567,618 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl24,351,113 - 4,356,647 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.124,351,113 - 4,357,167 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.222,931,347 - 2,937,425 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GAL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.115,849,947 - 5,857,355 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl15,849,952 - 5,857,072 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038103,132,895 - 103,140,180 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gal
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476718,204,508 - 18,210,416 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476718,195,288 - 18,210,634 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000024077   ⟹   ENSCLAP00000023851
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542217,202,946 - 17,207,948 (-)Ensembl
RefSeq Acc Id: XM_013513881   ⟹   XP_013369335
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,202,770 - 17,207,948 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013369335 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023851
  ENSCLAP00000023851.1
RefSeq Acc Id: XP_013369335   ⟸   XM_013513881
- Sequence:
Ensembl Acc Id: ENSCLAP00000023851   ⟸   ENSCLAT00000024077
Protein Domains
GALANIN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016374 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024077 ENTREZGENE
  ENSCLAT00000024077.1 UniProtKB/TrEMBL
InterPro Galanin UniProtKB/TrEMBL
  Galanin_pre UniProtKB/TrEMBL
  GMAP UniProtKB/TrEMBL
NCBI Gene Gal ENTREZGENE
PANTHER GALANIN PEPTIDES UniProtKB/TrEMBL
  PTHR16839 UniProtKB/TrEMBL
Pfam Galanin UniProtKB/TrEMBL
  GMAP UniProtKB/TrEMBL
PRINTS GALANIN UniProtKB/TrEMBL
PROSITE GALANIN UniProtKB/TrEMBL
SMART Galanin UniProtKB/TrEMBL
UniProt A0A8C2YUB3_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Gal  galanin and GMAP prepropeptide    galanin/GMAP prepropeptide  Symbol and/or name change 5135510 APPROVED