Syndig1 (synapse differentiation inducing 1)

Gene: Syndig1 (synapse differentiation inducing 1) Chinchilla lanigera

Analyze

Symbol:

Syndig1

Name:

synapse differentiation inducing 1

RGD ID:

8809766

Description:

ENCODES a protein that exhibits glutamate receptor binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN intracellular protein transport (ortholog); positive regulation of synapse assembly (ortholog); synaptic vesicle clustering (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cell body (ortholog); dendritic shaft (ortholog); dendritic spine (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

synapse differentiation-inducing gene protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	30,909,014 - 31,005,533 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	30,909,654 - 31,005,421 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (ISO)

positive regulation of synapse assembly (ISO)

synaptic vesicle clustering (ISO)

Cellular Component

cell body (ISO)

dendritic shaft (ISO)

dendritic spine (ISO)

early endosome membrane (ISO)

excitatory synapse (ISO)

Golgi membrane (ISO)

intracellular membrane-bounded organelle (ISO)

plasma membrane (ISO)

postsynaptic density (ISO)

postsynaptic density membrane (ISO)

synaptic vesicle membrane (ISO)

Molecular Function

glutamate receptor binding (ISO)

protein binding (ISO)

protein homodimerization activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Syndig1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	30,909,014 - 31,005,533 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	30,909,654 - 31,005,421 (+)	NCBI	ChiLan1.0	ChiLan1.0

SYNDIG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	24,469,629 - 24,666,616 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	24,469,629 - 24,666,616 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	24,450,265 - 24,647,252 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	24,397,835 - 24,595,167 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	24,397,834 - 24,595,167	NCBI
Celera	20	24,524,151 - 24,721,487 (+)	NCBI		Celera
Cytogenetic Map	20	p11.21	NCBI
HuRef	20	24,405,607 - 24,604,629 (+)	NCBI		HuRef
CHM1_1	20	24,450,308 - 24,648,495 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	24,531,610 - 24,729,659 (+)	NCBI		T2T-CHM13v2.0

Syndig1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	149,672,703 - 149,846,312 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	149,671,131 - 149,846,312 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	149,830,783 - 150,004,392 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	149,829,211 - 150,004,392 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	149,656,519 - 149,830,128 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	149,522,238 - 149,695,833 (+)	NCBI		MGSCv36	mm8
Celera	2	151,074,984 - 151,248,632 (+)	NCBI		Celera
Cytogenetic Map	2	G3	NCBI
cM Map	2	73.8	NCBI

Syndig1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	158,491,474 - 158,695,174 (+)	NCBI		GRCr8
mRatBN7.2	3	138,030,995 - 138,234,646 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	138,031,769 - 138,198,122 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	141,965,844 - 142,132,031 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	150,549,574 - 150,715,761 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	148,264,722 - 148,431,040 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	145,031,427 - 145,199,273 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	145,032,200 - 145,199,356 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	151,405,855 - 151,571,801 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	139,434,170 - 139,834,916 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	139,339,742 - 139,740,488 (+)	NCBI
Celera	3	136,716,149 - 136,879,658 (+)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

SYNDIG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	25,333,573 - 25,559,619 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	25,330,408 - 25,563,465 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	24,402,471 - 24,629,365 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	24,751,062 - 24,947,280 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	24,825,380 - 24,947,370 (+)	Ensembl	panpan1.1		panPan2

SYNDIG1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	759,787 - 865,659 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	685,782 - 865,359 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	707,338 - 896,758 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	919,502 - 1,109,045 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	918,789 - 1,108,951 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	819,974 - 925,587 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	859,317 - 1,048,759 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	848,398 - 1,037,785 (+)	NCBI		UU_Cfam_GSD_1.0

Syndig1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	147,745,538 - 147,938,240 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936620	1,165,709 - 1,359,179 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936620	1,165,312 - 1,359,127 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYNDIG1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	30,638,039 - 30,709,382 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	30,621,622 - 30,709,387 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	34,684,454 - 34,720,447 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SYNDIG1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	53,532,455 - 53,682,063 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	53,533,174 - 53,682,056 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	92,177,743 - 92,250,156 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Syndig1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624939	560,106 - 661,570 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624939	560,192 - 698,100 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005380980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013512392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01016669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01013508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000018542 ⟹ ENSCLAP00000018362

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955415	30,909,014 - 31,005,533 (+)	Ensembl

RefSeq Acc Id:

XM_005380980 ⟹ XP_005381037

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955415	30,909,654 - 31,005,421 (+)	NCBI

Sequence:

show sequence

GGAGGAGGGAAGGAGGAGGAGGAGGAGGGGCAGGAAAGGGACTAGAGAGGGGGTGAGGAGAGGG
ACGAGAGGGACCTGAACGCCAAGAGCCAAAGGAGGCGGGCGCCGCCACGCGCCCCGCACCGCCC
CGCACGAGCGCCCGCCCGGGAGACGCGGGGCCGCCTGAGTGCGGGTCACCTTGTCCCGAAGGAG
AAATGGGTTCCTCGAGGCAAGTTTGACCTGCGCATCCTGCGCAGCTGGACACCCAGCCAGGAGA
CCAGCACTATGGACAGCCTCGCTGGGCCAAAGAACGAGCTGGTGCACAGTAAGGTTCTGGACAC
TGGCCCAAGGAATGGCCTGATTAACACCAGAAGCTTCATGGCCGAGGGCAGGGATGGCCTGGTG
TCTGTGTATCCAGCACCTCAGTATCAGAGCCGCCAGAGCATGGACAGTGTCGGGAAGGAGGCTG
CACAGCAGCTGCTGGACCCCAATGCCCTGCAGAGGTCGGTGGAGTCTCGTTACCGGCCCAACCT
CATCCTCTACTCTGAGGGCATGCTGCGCTCGTGGGGCGACGGAGTGGCCACCGACTGCTGTGAG
ACCACCTTCATTGAGGACCGGTCACCCACCAAAGACAGCCTGGAGTACGCTGATGGGAAGTTTC
TGGACCTGTCAGCTGAGGACATCAAGATCCACACGCTGTCCTACGACGTGGAGGAGGAGGAGGA
GCTACAGGAGCTGGAGAGTGACTACTCCAGCGACACAGAGAGTGAGGACAACTTCCTCATGATG
CCCCCGCGGGACCACCTGGGCCTCAGCGTCTTCTCCATGCTCTGCTGCTTCTGGCCGCTGGGCA
TTGCGGCCTTCTACCTGTCCCATGAGACAAACAAGGCTGTGGCACAGGGCGACTTCCACCAGGC
CAGCACCAGCTCCCGGCGTGCCCTCTTCCTGGCTGTGCTGTCCATCACCATCGGCACAGGCATC
TACGTGGGCGTGGCCGTCGCCCTCATCGCCTACCTCTCCAAGAACAACCACCTGTGAGCTTCCC
ACGGGCACCAGGAGGGACCGGCGTGTCAGGGGCTGCTCGGCAATGGCAGACTGCGCCTGAGGGT
GGAGTTTGCACCATGACTCCCCGTTTCCTCCTTTAACTCTGTTGTCATAGCACTGAGTGGGCTC
AGCACACGTGGGCTCAAAGCCACTGGCCTCGGGGCTGTCTGGGACAGGTCCAGCTAGTGGATGA
CAATGCACCGTCTGCACAGCTGCCATGCCTCAAAGGCCACTGCATTAGCAATATACAAACAGTT
AAAAAAAAAAAAAAGTATTTATTTTTATGGAACATGGTCAAGGTGCAATAGGCTGAGGGCAGGG
GACATCCGCTCTGCTGTCGGTGGCCGTCTGGCTTCTCCACGTCCCCAGCATCCATGGAACTTTT
CTCCCAGAAGAAAAGGAAATGGGTCTGGGGACAGAGAGCACAGAACATCTGTGGGGCACCCGGC
ATCACCATCTGCAGAAGGGTCAAGCCCTGAGGACATGAAGCCAGAAAGACACAGCACCCGTCCC
AGGCCCCTCACACCCTCCACGCTGGCCTGAATGTGTTGCTCCACAGCCCCCGCCGCAGCAGTGC
GCAGCCTCAAGCTATCAGGGAGGCAGTCACGGTGGGCACCCCAGGCTCCTTGAAAGTGGCCCCA
CATTGGTACCAGGAACTGGAGGCAGAGGAGCCAGGAAGACACTGGTGCCCCTGACGTGACCGCC
CTTGAGGGGCTCGCCCAGTCTTAGGCAATGACGACAACGCCAACTCCAGACTCGAGGCGGGCCT
TACTCTGTAGACTCAATGAATCGCTATTTTCTTGTCATTTTTTAAGTGCAACTCTGGCTTTACA
CTGCTTCAGTTACCAGATGAATGCTGAGAAATAAGTCATCACAGACATCTTAATATCATCTCCC
AGCTGTTTTATGGTGTTCATTATTTAACAAAAGTTATCTTTTA

hide sequence

RefSeq Acc Id:

XM_013512392 ⟹ XP_013367846

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955415	30,909,654 - 30,985,602 (+)	NCBI

Sequence:

show sequence

GGAGGAGGGAAGGAGGAGGAGGAGGAGGGGCAGGAAAGGGACTAGAGAGGGGGTGAGGAGAGGG
ACGAGAGGGACCTGAACGCCAAGAGCCAAAGGAGGCGGGCGCCGCCACGCGCCCCGCACCGCCC
CGCACGAGCGCCCGCCCGGGAGACGCGGGGCCGCCTGAGTGCGGGTCACCTTGTCCCGAAGGAG
AAATGGGTTCCTCGAGGCAAGTTTGACCTGCGCATCCTGCGCAGCTGGACACCCAGCCAGGAGA
CCAGCACTATGGACAGCCTCGCTGGGCCAAAGAACGAGCTGGTGCACAGTAAGGTTCTGGACAC
TGGCCCAAGGAATGGCCTGATTAACACCAGAAGCTTCATGGCCGAGGGCAGGGATGGCCTGGTG
TCTGTGTATCCAGCACCTCAGTATCAGAGCCGCCAGAGCATGGACAGTGTCGGGAAGGAGGCTG
CACAGCAGCTGCTGGACCCCAATGCCCTGCAGAGGTCGGTGGAGTCTCGTTACCGGCCCAACCT
CATCCTCTACTCTGAGGGCATGCTGCGCTCGTGGGGCGACGGAGTGGCCACCGACTGCTGTGAG
ACCACCTTCATTGAGGACCGGTCACCCACCAAAGACAGCCTGGAGTACGCTGATGGGAAGTTTC
TGGACCTGTCAGCTGAGGACATCAAGATCCACACGCTGTCCTACGACGTGGAGGAGGAGGAGGA
GCTACAGGAGCTGGAGAGTGACTACTCCAGCGACACAGAGAGTGAGGACAACTTCCTCATGATG
CCCCCGCGGGACCACCTGGGCCTCAGCGTCTTCTCCATGCTCTGCTGCTTCTGGCCGCTGGGCA
TTGCGGCCTTCTACCTGTCCCATGAGAGTACAAGAGATCTTCACAGATACTAGAGACCTGAAGC
ATCCAGCCAAGGGCCTGGAGCCTGGGGCAATGTCCCACGCAAGTCCACATCAGAGGCCAAGGAG
TCTGCTATGGGAGACTGAAGGGTCTGCACAGAAAGCCCAGGGGCCGGCACTGGAATGTAGAGAG
TCTGCACCGGCAGCTGAAAGGCAGTGCCGGAAGCTGAAGAATCTTCTCCAAGAACCAGGAGATG
ATGCTCCATGCTCAAGGCGAAGGTGAGGACAAGAGCTCCTCCCCAGCGCTCCCACCCCAGAGAA
CTGCAGCCGTCCTTGGCAAAGGTGAAGACAGAGGCTCAGCCCAAGAGAACAGCCCAAGCTTTTT
GGGAGAAAAGCAGCCAGACAAAAATCAGCAGCGCCAAGGCTCTTCCAAGAGAATCAGTGTGAAA
TCCCTTTTATACGGTCCTCCTTTTATAGTGTTCCAACAACAAGCCCCCTTAATTGGGTCTCCCA
TGCCCAGAACCACGCTGACTCAATTCAGCTAGGTGCCCCGACTCCAGTTGACAGTCAACAGCCA
CACTTTGTGACTTCACCCGGGGTGGCCCTTGGGAGTGGAATTTTGGTTGCATTCCCTCTGTAAC
CTCTCAACTTCTGCCAGGCCCACTTGTGGAATGATAATACTGGCTTTGCTTATTATTTGTGCTA
GGATTTATGTGCCTTCTTTTTCAATTCTGCTACAAGTTCTTTTTTTCCTGTTCCAATTACCTGC
CAGATTTTCAAGCTGTCCCTTTGTCTCCCAAATACGGAAGCAGAGGTGTTTTACGGTCTCTGCC
TGGTAATTGCAGAGCTGGGGGTCTGCTTTTTCTGTGTATCCTATTTGCATGGTCCATCTTCCTA
GACCCCAGTCACAGACCGGGCACTGTTCTGAGAGGTACTACAGAGCAGTCGGAGGGTTAGAGGG
GTAGAGGGTTATTCATCCTCTGCACACAGGTCCTTCTGGGCTTTCCCAGGATGTGGGCTCAGTT
TGAAGTCACCTTCGTCTGTGCACCAGGAGGTGCTGCAGTTAGACAGTGTGCTCTGCCTCAGTTT
CTCTATGGCCTCCCACTGTGACACTCTGGCCCACCACAGGGGCTAGTTTAACCACATCTCCCTC
TAGTGGACTCTGAGCCTCAGCCGTGATCCCCACTACCCTACAAAGTAGACAAAGCTGGCCCTCC
TGAGTGCCCCTTTGGGCCAGCAACCATCCCAGACACAGTGTCCTGAGCCTTTTCACCCGTCCAG
AATCTTGTCCCCCTCCCTAGTCTTGGACAGATAACCTTGTCTTTTGTCTCTTTGGTGCTTGCTA
AACTGCTCTTTACCATCTCTGCAAGGTTTGCTAGTCCGGCACCACCAGGAGTGGAAATCTGCAT
TTCTCCATCTCCCTAGTTGTGTGGACTGGGAACATGTCCCTTTACAATGACAGCACTTTCAATT
TAGGATGCAAAGTCTTGGTTGAGGAATTTAGAGTCGCTGCTGCCAGAACTCTCGCTCTCTCCAG
CACTAATTGGAGCCTGAGCTGCCTTGTGCTACAAGAGTGATCAGGAACCATGCCACATGGCTGG
GAAGGGATAGGAAATGAGACAGGACCAGTGCCCCCCCCCACTTGACACCAGGGGAGAAACCACC
CTGGCCTCATAACATTAAGAGCCACCCCCCAGGCGCCCACCAAGTGGCCACCACCTCTGCACCT
GGAGCAGAGATGGATGCCCCCAAACATCCTTCTACAAAGATGAACCAGGTGGCTTCTGGTGCAG
GCCCCTAAGAGTGTCCGGCAGAGTTGCAGGTCGATGGCTGAGATCCAGTCAGGCCCAGGTGATC
TGGAGACATGGCTCGTGCAAAACTGTGGACAATCAGCACTGACGCCAGCCCCAAGCGGGAACAG
GCTGCTTACAGGGCATGAGTTCCTGGCCCTGCTGGCTCCGTCCTGCATCACAGACTGAAAGAAT
AAAGACAGAGGAGACCTGAATGGGAACTGCCCAGGAAGGCAGGAAGTCACACTGATTCAGACTT
TACATGACAAAGGGGAGAAGGCTGGCCTGGTAGTGGAAAGGTGGGAGAGAGCAGAGGCCCCCAA
ATGCAGACTAGAGCTGTCGTCAACAAAGGACCATTGCAGATGCCAAGGACTGTCATGCTACACA
TGGGGCATCAGGAGCAGCAGGCAGGAAGCAGCATATGTAACAGCATCTCTGAACTGCCCCTTCC
TCAGGCTGGAACCAGGAGGAAAAGAACAGACAGTTCATCAGACACTGAGGTCACTGTGTACAGA
GAGAGGCCCAGCTAGAGAACATTGTGAGAGGACCACCTGAGAACAGAGGGAGAGAGGGCACCTG
GGGATGGGTGGGTAGAGAAGACCTCCTGGCAGAGACCTGGGACAGTTCATTCCCCCAGCCCCTG
CCCTTTGACATGACCTTTGCCCTGGGACCTCTCTCCCAAACATCTGAACTGGATGCTCTGGGTG
TTTACCTTTCAAACCATTTCTCCCACCAAACCTCAGAATTTTCATATTTGACTCCCTAAACCTG
ATTACGGAGATGTTTGAGGTTTTCACTTTTTCCCACCATTGTGTGTGTAGGACACATCATCGTG
AAACAATGAGACCCCATGCATTCTAGAGCTGATGGCCATGCCCATAGTCATCAAGTGGGGGGAC
TGTCCTGCGTACCCCACCATCTCCTGCTTTTGTCCACAAGTACGTTATTCTCAAGTGTCCCTGG
GTTTACAGGAAACTGAATCCCACCCTCAGTGGATCTGGTAGGCATGAGCTGATACAGTCAGCAC
CTCTCATCATGCGGATCATGCGGGCAGGTGGCGGTAGCTGGCGAAGCATGGACCTGTTGAAGTC
AGGGAGCAGAGGTGGGGAGGATGCCTCAGCTGAGGGGTGGAGAGGCAGCGAGGGGACCACCTAG
GAAGGGGATTCAGGATGCTTGGCAGCCAGAGGTGGCAACAGGTAAATGGAGGCTTGGTGAAGGA
CAGACCCAGCTGCAGGAGCCCAGCCAGGTGCAGGAGCCACATGGGCTTTGTAGACAAATCAGTC
GGAAAACATCACTGGGGAGTAAGATGGCCCCGTGCACTGCATCACATGGCAGATTTGAACTTGT
GTCAGGCAGAAGTGTGGCAGCCACTCAGTGCTCATGAGTCTGCAAAGTCACCAGGTGATCTCTG
TCCCTGTCCCTATTTTCTTCTCCCTCTGCCTCTCCCTCTCCCTCTGCCTCTCCCTCTCCCTCTC
CCTGTCCCTCTCTCTCTCTCTCTCTCTTTCCCTGTCTCTTTATGTGCATATTTAATATGCTGAT
TGTAGCATCTGAGATCTGCTTTGCAACTTCTGGATTTGCACCGTTCCTCATAAATATTAATGAT
CTGGGGCAGCCAAGACAAATCAGATTTCTGACCTTTTTTCTCCCCTTTGGAACCCATGCTGCAG
CTAAATCCCTGATTGTAAATTGTTTGGGTGAATAAATG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005381037	(Get FASTA)	NCBI Sequence Viewer
	XP_013367846	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000018362
	ENSCLAP00000018362.1

RefSeq Acc Id:	XP_005381037 ⟸ XM_005380980
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VNM2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSLAGPKNELVHSKVLDTGPRNGLINTRSFMAEGRDGLVSVYPAPQYQSRQSMDSVGKEAAQQ LLDPNALQRSVESRYRPNLILYSEGMLRSWGDGVATDCCETTFIEDRSPTKDSLEYADGKFLDL SAEDIKIHTLSYDVEEEEELQELESDYSSDTESEDNFLMMPPRDHLGLSVFSMLCCFWPLGIAA FYLSHETNKAVAQGDFHQASTSSRRALFLAVLSITIGTGIYVGVAVALIAYLSKNNHL hide sequence

RefSeq Acc Id:

XP_013367846 ⟸ XM_013512392

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDSLAGPKNELVHSKVLDTGPRNGLINTRSFMAEGRDGLVSVYPAPQYQSRQSMDSVGKEAAQQ
LLDPNALQRSVESRYRPNLILYSEGMLRSWGDGVATDCCETTFIEDRSPTKDSLEYADGKFLDL
SAEDIKIHTLSYDVEEEEELQELESDYSSDTESEDNFLMMPPRDHLGLSVFSMLCCFWPLGIAA
FYLSHESTRDLHRY

hide sequence

RefSeq Acc Id:

ENSCLAP00000018362 ⟸ ENSCLAT00000018542

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012586	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000018542	ENTREZGENE
	ENSCLAT00000018542.1	UniProtKB/TrEMBL
InterPro	CD225/Dispanin_fam	UniProtKB/TrEMBL
NCBI Gene	Syndig1	ENTREZGENE
PANTHER	SYNAPSE DIFFERENTIATION-INDUCING GENE PROTEIN 1	UniProtKB/TrEMBL
	UPF0338 PROTEIN	UniProtKB/TrEMBL
Pfam	CD225	UniProtKB/TrEMBL
UniProt	A0A8C2VNM2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar