Ankrd13b (ankyrin repeat domain 13B) - Rat Genome Database

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Gene: Ankrd13b (ankyrin repeat domain 13B) Chinchilla lanigera
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Symbol: Ankrd13b
Name: ankyrin repeat domain 13B
RGD ID: 8808056
Description: ENCODES a protein that exhibits ubiquitin-dependent protein binding (ortholog); INVOLVED IN negative regulation of receptor internalization (ortholog); ASSOCIATED WITH genetic disease (ortholog); neurofibromatosis 1 (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat domain-containing protein 13B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554813,644,332 - 3,661,895 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554813,644,332 - 3,662,375 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ankrd13b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554813,644,332 - 3,661,895 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554813,644,332 - 3,662,375 (-)NCBIChiLan1.0ChiLan1.0
ANKRD13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381729,593,132 - 29,614,761 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1729,589,769 - 29,614,761 (+)EnsemblGRCh38hg38GRCh38
GRCh371727,920,150 - 27,941,779 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361724,944,653 - 24,965,905 (+)NCBINCBI36Build 36hg18NCBI36
Celera1724,781,393 - 24,802,648 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1724,129,928 - 24,151,179 (+)NCBIHuRef
CHM1_11727,983,046 - 28,004,250 (+)NCBICHM1_1
T2T-CHM13v2.01730,536,010 - 30,557,662 (+)NCBIT2T-CHM13v2.0
Ankrd13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391177,361,311 - 77,380,868 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1177,361,311 - 77,380,504 (-)EnsemblGRCm39 Ensembl
GRCm381177,470,485 - 77,490,042 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,470,485 - 77,489,678 (-)EnsemblGRCm38mm10GRCm38
MGSCv371177,283,989 - 77,303,180 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361177,286,441 - 77,289,267 (-)NCBIMGSCv36mm8
Celera1184,969,048 - 84,988,239 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.59NCBI
Ankrd13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81062,817,791 - 62,836,456 (-)NCBIGRCr8
mRatBN7.21062,319,660 - 62,338,342 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1062,319,647 - 62,340,253 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01062,674,416 - 62,691,949 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1062,674,561 - 62,690,845 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01062,371,873 - 62,389,402 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41066,628,069 - 66,646,674 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1061,323,116 - 61,341,905 (-)NCBICelera
Cytogenetic Map10q24NCBI
ANKRD13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21934,841,569 - 34,866,687 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11736,723,685 - 36,748,848 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01727,159,796 - 27,181,528 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11727,676,809 - 27,684,179 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1727,676,809 - 27,684,253 (-)Ensemblpanpan1.1panPan2
ANKRD13B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1943,696,334 - 43,713,888 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl943,696,398 - 43,714,912 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha942,849,401 - 42,867,986 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0944,512,483 - 44,530,865 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl944,512,507 - 44,530,855 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1943,296,847 - 43,315,433 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0943,587,526 - 43,604,739 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0943,667,644 - 43,686,231 (+)NCBIUU_Cfam_GSD_1.0
Ankrd13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560242,827,079 - 42,846,390 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365385,705,026 - 5,724,335 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365385,700,063 - 5,724,335 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD13B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1245,787,684 - 45,805,999 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11245,787,661 - 45,806,003 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21247,926,026 - 47,946,281 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKRD13B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11623,329,783 - 23,354,522 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1623,333,688 - 23,353,340 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660756,717,954 - 6,740,674 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankrd13b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247862,090,946 - 2,108,717 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247862,091,030 - 2,108,736 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000009237   ⟹   ENSCLAP00000009108
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554813,644,332 - 3,661,895 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000009238   ⟹   ENSCLAP00000009109
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554813,645,509 - 3,661,858 (-)Ensembl
RefSeq Acc Id: XM_005402675   ⟹   XP_005402732
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554813,644,332 - 3,662,375 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005402732 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000009108
  ENSCLAP00000009108.1
  ENSCLAP00000009109.1
RefSeq Acc Id: XP_005402732   ⟸   XM_005402675
- UniProtKB: A0A8C2YMA6 (UniProtKB/TrEMBL),   A0A8C2YMA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000009109   ⟸   ENSCLAT00000009238
RefSeq Acc Id: ENSCLAP00000009108   ⟸   ENSCLAT00000009237


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006356 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009237 ENTREZGENE
  ENSCLAT00000009237.1 UniProtKB/TrEMBL
  ENSCLAT00000009238.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro ANKRD13 UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  UIM_dom UniProtKB/TrEMBL
NCBI Gene Ankrd13b ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13B UniProtKB/TrEMBL
  PTHR12447 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  GPCR_chapero_1 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  UIM UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A8C2YMA3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YMA6 ENTREZGENE, UniProtKB/TrEMBL