Sostdc1 (sclerostin domain containing 1) - Rat Genome Database

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Gene: Sostdc1 (sclerostin domain containing 1) Chinchilla lanigera
Analyze
Symbol: Sostdc1
Name: sclerostin domain containing 1
RGD ID: 8807755
Description: ENCODES a protein that exhibits BMP binding (ortholog); BMP receptor activity (ortholog); INVOLVED IN BMP signaling pathway (ortholog); canonical Wnt signaling pathway (ortholog); cell fate commitment (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy A7 (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sclerostin domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541019,657,029 - 19,662,131 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541019,657,805 - 19,662,121 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sostdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541019,657,029 - 19,662,131 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541019,657,805 - 19,662,121 (-)NCBIChiLan1.0ChiLan1.0
SOSTDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38716,461,481 - 16,465,738 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl716,461,481 - 16,530,580 (-)EnsemblGRCh38hg38GRCh38
GRCh37716,501,106 - 16,505,363 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36716,467,631 - 16,471,999 (-)NCBINCBI36Build 36hg18NCBI36
Build 34716,274,347 - 16,278,714NCBI
Celera716,480,854 - 16,485,222 (-)NCBICelera
Cytogenetic Map7p21.2NCBI
HuRef716,387,637 - 16,392,005 (-)NCBIHuRef
CHM1_1716,500,852 - 16,505,220 (-)NCBICHM1_1
T2T-CHM13v2.0716,591,217 - 16,595,471 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2716,554,239 - 16,558,607 (-)NCBI
Sostdc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391236,364,168 - 36,368,451 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1236,364,138 - 36,368,451 (+)EnsemblGRCm39 Ensembl
GRCm381236,314,169 - 36,318,452 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1236,314,139 - 36,318,452 (+)EnsemblGRCm38mm10GRCm38
MGSCv371237,040,756 - 37,045,039 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361236,824,492 - 36,828,711 (+)NCBIMGSCv36mm8
Celera1237,763,054 - 37,767,254 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1216.82NCBI
Sostdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8658,778,623 - 58,782,797 (+)NCBIGRCr8
mRatBN7.2653,051,336 - 53,055,510 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl653,051,354 - 53,055,579 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx653,344,009 - 53,348,187 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0653,658,884 - 53,663,061 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0653,129,317 - 53,133,490 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0655,812,820 - 55,816,994 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl655,812,747 - 55,817,066 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0665,423,740 - 65,427,914 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4655,066,277 - 55,070,451 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1655,069,402 - 55,073,577 (+)NCBI
Celera652,193,795 - 52,197,969 (+)NCBICelera
Cytogenetic Map6q16NCBI
SOSTDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2621,295,189 - 21,408,065 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1769,619,912 - 69,732,876 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0717,193,531 - 17,229,769 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1716,443,703 - 16,448,076 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl716,443,703 - 16,448,076 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl716,443,703 - 16,448,076 (-)NCBIpanpan1.1panPan2
SOSTDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11431,035,759 - 31,079,139 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1431,022,766 - 31,026,737 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1431,022,766 - 31,026,737 (-)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1430,543,856 - 30,600,514 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01430,942,576 - 30,998,969 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1430,942,759 - 30,947,128 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11431,045,159 - 31,101,747 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01430,757,610 - 30,813,982 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01431,070,106 - 31,126,811 (-)NCBIUU_Cfam_GSD_1.0
Sostdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511875,301,027 - 75,305,460 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365462,975,606 - 2,980,514 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365462,976,045 - 2,980,487 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOSTDC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl985,743,341 - 85,747,591 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1985,743,332 - 85,747,893 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2994,581,754 - 94,585,919 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SOSTDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12141,645,884 - 41,651,360 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2141,647,079 - 41,652,093 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604262,859,358 - 62,864,068 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sostdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473913,766,815 - 13,772,322 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473913,767,523 - 13,771,708 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000013328   ⟹   ENSCLAP00000013177
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541019,657,029 - 19,662,131 (-)Ensembl
RefSeq Acc Id: XM_005377334   ⟹   XP_005377391
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541019,657,805 - 19,662,121 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005377391 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013177
  ENSCLAP00000013177.1
RefSeq Acc Id: XP_005377391   ⟸   XM_005377334
- UniProtKB: A0A8C2YP82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000013177   ⟸   ENSCLAT00000013328
Protein Domains
CTCK


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009096 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013328 ENTREZGENE
  ENSCLAT00000013328.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.90.10 UniProtKB/TrEMBL
InterPro Cys_knot_C UniProtKB/TrEMBL
  Cystine-knot_cytokine UniProtKB/TrEMBL
  Sclerostin/SOSTDC1 UniProtKB/TrEMBL
NCBI Gene Sostdc1 ENTREZGENE
PANTHER PTHR14903 UniProtKB/TrEMBL
  SCLEROSTIN DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam Sclerostin UniProtKB/TrEMBL
PROSITE CTCK_2 UniProtKB/TrEMBL
UniProt A0A8C2YP82 ENTREZGENE, UniProtKB/TrEMBL