Necap1 (NECAP endocytosis associated 1) - Rat Genome Database

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Gene: Necap1 (NECAP endocytosis associated 1) Chinchilla lanigera
Analyze
Symbol: Necap1
Name: NECAP endocytosis associated 1
RGD ID: 8807142
Description: INVOLVED IN endocytosis (ortholog); presynaptic endocytosis (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN clathrin vesicle coat (ortholog); clathrin-coated pit (ortholog); presynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adaptin ear-binding coat-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554136,737,785 - 6,754,162 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554136,737,785 - 6,751,672 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Necap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554136,737,785 - 6,754,162 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554136,737,785 - 6,751,672 (+)NCBIChiLan1.0ChiLan1.0
NECAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38128,082,274 - 8,097,881 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl128,076,939 - 8,097,881 (+)EnsemblGRCh38hg38GRCh38
GRCh37128,234,870 - 8,250,477 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,989,001 - 8,141,634 (+)NCBINCBI36Build 36hg18NCBI36
Celera129,811,877 - 9,827,432 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef128,046,534 - 8,062,074 (+)NCBIHuRef
CHM1_1128,234,026 - 8,249,598 (+)NCBICHM1_1
T2T-CHM13v2.0128,095,874 - 8,111,478 (+)NCBIT2T-CHM13v2.0
Necap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396122,851,516 - 122,865,902 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6122,851,433 - 122,865,900 (+)EnsemblGRCm39 Ensembl
GRCm386122,874,557 - 122,888,943 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6122,874,474 - 122,888,941 (+)EnsemblGRCm38mm10GRCm38
MGSCv376122,824,575 - 122,838,959 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366122,840,176 - 122,854,560 (+)NCBIMGSCv36mm8
Celera6124,676,728 - 124,691,173 (+)NCBICelera
Cytogenetic Map6F2NCBI
cM Map657.96NCBI
Necap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84157,775,890 - 157,790,992 (+)NCBIGRCr8
mRatBN7.24156,103,935 - 156,119,068 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4156,103,988 - 156,119,068 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4162,373,641 - 162,388,733 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04158,156,863 - 158,171,955 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04156,801,946 - 156,817,038 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04155,709,712 - 155,724,801 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4155,709,613 - 155,724,790 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04222,730,478 - 222,745,567 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,354,507 - 159,369,596 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14159,599,461 - 159,614,524 (+)NCBI
Celera4144,924,247 - 144,939,336 (+)NCBICelera
Cytogenetic Map4q42NCBI
NECAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21013,635,763 - 13,653,693 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11213,632,524 - 13,654,420 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0128,201,908 - 8,217,043 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,244,137 - 8,259,247 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,243,785 - 8,282,647 (+)Ensemblpanpan1.1panPan2
NECAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,460,545 - 37,472,512 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2737,460,607 - 37,507,052 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,143,445 - 9,155,412 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02737,814,521 - 37,826,493 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2737,814,508 - 37,864,273 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12737,689,204 - 37,701,156 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02737,730,473 - 37,742,640 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,630,216 - 8,642,197 (-)NCBIUU_Cfam_GSD_1.0
Necap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494599,188,170 - 99,200,553 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936892372,284 - 385,202 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936892372,743 - 385,127 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NECAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,122,335 - 63,139,664 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1563,122,280 - 63,135,550 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NECAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,155,432 - 8,170,873 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,154,976 - 8,171,025 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666089251,027 - 267,789 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Necap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248605,223,610 - 5,237,451 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248605,224,170 - 5,237,235 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000023925   ⟹   ENSCLAP00000023699
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554136,737,785 - 6,754,162 (+)Ensembl
RefSeq Acc Id: XM_005378916   ⟹   XP_005378973
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554136,737,785 - 6,751,672 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005378973 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023699
  ENSCLAP00000023699.1
Reference Protein Sequences
RefSeq Acc Id: XP_005378973   ⟸   XM_005378916
- UniProtKB: A0A8C2W3G7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000023699   ⟸   ENSCLAT00000023925
Protein Domains
NECAP PHear


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016261 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023925 ENTREZGENE
  ENSCLAT00000023925.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro NECAP_PHear UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
NCBI Gene Necap1 ENTREZGENE
PANTHER ADAPTIN EAR-BINDING COAT-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
  ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED UniProtKB/TrEMBL
Pfam DUF1681 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A8C2W3G7 ENTREZGENE, UniProtKB/TrEMBL