Kif1a (kinesin family member 1A) - Rat Genome Database

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Gene: Kif1a (kinesin family member 1A) Chinchilla lanigera
Analyze
Symbol: Kif1a
Name: kinesin family member 1A
RGD ID: 8806691
Description: ENCODES a protein that exhibits identical protein binding (ortholog); microtubule binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); anterograde neuronal dense core vesicle transport (ortholog); anterograde synaptic vesicle transport (ortholog); ASSOCIATED WITH Abnormal Reflexes (ortholog); autistic disorder (ortholog); Bethlem Myopathy 1A (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); microtubule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kinesin-like protein KIF1A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955542756,835 - 832,889 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955542756,834 - 832,805 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Kif1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955542756,835 - 832,889 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955542756,834 - 832,805 (+)NCBIChiLan1.0ChiLan1.0
KIF1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382240,713,767 - 240,821,403 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2240,713,761 - 240,824,293 (-)EnsemblGRCh38hg38GRCh38
GRCh372241,653,184 - 241,760,820 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362241,301,857 - 241,408,297 (-)NCBINCBI36Build 36hg18NCBI36
Celera2235,326,008 - 235,411,535 (-)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2233,412,721 - 233,497,777 (-)NCBIHuRef
CHM1_12241,659,240 - 241,765,801 (-)NCBICHM1_1
T2T-CHM13v2.02241,210,501 - 241,320,366 (-)NCBIT2T-CHM13v2.0
Kif1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39192,943,180 - 93,029,760 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl192,943,186 - 93,029,673 (-)EnsemblGRCm39 Ensembl
GRCm38193,015,455 - 93,102,039 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,015,464 - 93,101,951 (-)EnsemblGRCm38mm10GRCm38
MGSCv37194,912,033 - 94,998,442 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,848,684 - 94,932,228 (-)NCBIMGSCv36mm8
Celera195,964,533 - 96,050,948 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map146.74NCBI
Kif1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89101,010,447 - 101,094,891 (-)NCBIGRCr8
mRatBN7.2993,563,033 - 93,647,412 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,563,045 - 93,647,480 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.09100,171,851 - 100,253,626 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,171,772 - 100,253,609 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0999,830,158 - 99,911,717 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4992,296,552 - 92,368,316 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1992,489,616 - 92,573,089 (-)NCBI
Celera991,101,708 - 91,183,111 (-)NCBICelera
Cytogenetic Map9q36NCBI
KIF1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213143,398,896 - 143,508,434 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B143,413,861 - 143,523,399 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B127,969,494 - 128,078,282 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B246,774,669 - 246,883,469 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B246,778,679 - 246,860,326 (-)Ensemblpanpan1.1panPan2
KIF1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12550,855,703 - 50,945,014 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2550,858,698 - 50,944,964 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2551,072,045 - 51,136,473 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02551,053,878 - 51,118,327 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2551,050,905 - 51,139,895 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12550,894,784 - 50,959,304 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02550,641,341 - 50,705,691 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02550,917,144 - 50,981,524 (-)NCBIUU_Cfam_GSD_1.0
Kif1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303192,242,542 - 192,307,773 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936745911,709 - 974,199 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936745911,651 - 976,878 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15139,610,627 - 139,694,826 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115139,610,624 - 139,694,841 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215157,512,025 - 157,563,535 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIF1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110126,784,843 - 126,890,649 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10126,781,589 - 126,867,219 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604072,498,200 - 72,611,057 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kif1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248474,961,552 - 5,035,061 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248474,961,552 - 5,035,125 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000004393   ⟹   ENSCLAP00000004310
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955542756,835 - 832,805 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000004394   ⟹   ENSCLAP00000004311
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955542756,835 - 832,805 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000004395   ⟹   ENSCLAP00000004312
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955542775,847 - 832,889 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000004396   ⟹   ENSCLAP00000004313
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955542775,847 - 832,889 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000004397   ⟹   ENSCLAP00000004314
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955542775,909 - 830,090 (+)Ensembl
RefSeq Acc Id: XM_005411149   ⟹   XP_005411206
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955542756,834 - 832,805 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005411150   ⟹   XP_005411207
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955542756,834 - 832,805 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005411151   ⟹   XP_005411208
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955542756,835 - 832,805 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005411152   ⟹   XP_005411209
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955542756,835 - 832,805 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508118   ⟹   XP_013363572
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955542756,834 - 832,805 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508119   ⟹   XP_013363573
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955542756,834 - 832,805 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508120   ⟹   XP_013363574
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955542756,834 - 832,805 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508121   ⟹   XP_013363575
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955542756,834 - 832,805 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508122   ⟹   XP_013363576
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955542756,834 - 832,805 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508124   ⟹   XP_013363578
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955542756,835 - 832,805 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508125   ⟹   XP_013363579
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955542756,834 - 832,805 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005411206   ⟸   XM_005411149
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UWG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005411207   ⟸   XM_005411150
- Peptide Label: isoform X7
- UniProtKB: A0A8C2UVI0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005411208   ⟸   XM_005411151
- Peptide Label: isoform X8
- UniProtKB: A0A8C2UU42 (UniProtKB/TrEMBL),   A0A8C2UVI0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005411209   ⟸   XM_005411152
- Peptide Label: isoform X10
- UniProtKB: A0A8C2UVI0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363572   ⟸   XM_013508118
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UWG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363573   ⟸   XM_013508119
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UWG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363574   ⟸   XM_013508120
- Peptide Label: isoform X4
- UniProtKB: A0A8C2UWG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363575   ⟸   XM_013508121
- Peptide Label: isoform X5
- UniProtKB: A0A8C2UWG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363576   ⟸   XM_013508122
- Peptide Label: isoform X6
- UniProtKB: A0A8C2USY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363579   ⟸   XM_013508125
- Peptide Label: isoform X11
- UniProtKB: A0A8C2USY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363578   ⟸   XM_013508124
- Peptide Label: isoform X9
- UniProtKB: A0A8C2UR61 (UniProtKB/TrEMBL),   A0A8C2UVI0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000004313   ⟸   ENSCLAT00000004396
RefSeq Acc Id: ENSCLAP00000004314   ⟸   ENSCLAT00000004397
RefSeq Acc Id: ENSCLAP00000004311   ⟸   ENSCLAT00000004394
RefSeq Acc Id: ENSCLAP00000004312   ⟸   ENSCLAT00000004395
RefSeq Acc Id: ENSCLAP00000004310   ⟸   ENSCLAT00000004393
Protein Domains
FHA   Kinesin motor   PH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003068 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004393 ENTREZGENE
  ENSCLAT00000004393.1 UniProtKB/TrEMBL
  ENSCLAT00000004394 ENTREZGENE
  ENSCLAT00000004394.1 UniProtKB/TrEMBL
  ENSCLAT00000004395 ENTREZGENE
  ENSCLAT00000004395.1 UniProtKB/TrEMBL
  ENSCLAT00000004396 ENTREZGENE
  ENSCLAT00000004396.1 UniProtKB/TrEMBL
  ENSCLAT00000004397 ENTREZGENE
  ENSCLAT00000004397.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  2.60.200.20 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
  6.10.250.2520 UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/TrEMBL
  FHA_KIF1A UniProtKB/TrEMBL
  Kinesin-like UniProtKB/TrEMBL
  Kinesin-like_KIF1-typ UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  PH_KIFIA_KIFIB UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
NCBI Gene Kif1a ENTREZGENE
PANTHER KINESIN-LIKE PROTEIN KIF1A ISOFORM X1 UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 9 UniProtKB/TrEMBL
Pfam DUF3694 UniProtKB/TrEMBL
  FHA UniProtKB/TrEMBL
  KIF1B UniProtKB/TrEMBL
  Kinesin UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE FHA_DOMAIN UniProtKB/TrEMBL
  KINESIN_MOTOR_1 UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
SMART FHA UniProtKB/TrEMBL
  KISc UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF49879 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2UR61 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2USY0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UU42 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UVI0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UWG7 ENTREZGENE, UniProtKB/TrEMBL