LOC102010861 (chromosome unknown open reading frame, human C1orf94) - Rat Genome Database

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Gene: LOC102010861 (chromosome unknown open reading frame, human C1orf94) Chinchilla lanigera
Analyze
Symbol: LOC102010861 (Ensembl: C1orf94)
Name: chromosome unknown open reading frame, human C1orf94
RGD ID: 8806556
Description: ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein C1orf94 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545212,289,791 - 12,327,018 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545212,288,967 - 12,325,948 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
LOC102010861
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545212,289,791 - 12,327,018 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545212,288,967 - 12,325,948 (+)NCBIChiLan1.0ChiLan1.0
C1orf94
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38134,166,993 - 34,219,131 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl134,166,883 - 34,219,131 (+)EnsemblGRCh38hg38GRCh38
GRCh37134,632,594 - 34,684,732 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36134,415,858 - 34,457,319 (+)NCBINCBI36Build 36hg18NCBI36
Celera132,904,826 - 32,956,861 (+)NCBICelera
Cytogenetic Map1p35.1NCBI
HuRef132,749,265 - 32,801,523 (+)NCBIHuRef
CHM1_1134,748,021 - 34,800,132 (+)NCBICHM1_1
T2T-CHM13v2.0134,028,721 - 34,080,828 (+)NCBIT2T-CHM13v2.0
CK137956
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394127,821,385 - 127,882,072 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4127,821,385 - 127,864,744 (-)EnsemblGRCm39 Ensembl
GRCm384127,927,592 - 127,988,302 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4127,927,592 - 127,970,951 (-)EnsemblGRCm38mm10GRCm38
MGSCv374127,604,836 - 127,648,085 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364127,430,307 - 127,473,060 (-)NCBIMGSCv36mm8
Celera4126,262,123 - 126,305,679 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map461.65NCBI
C5h1orf94
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85145,566,517 - 145,610,294 (-)NCBIGRCr8
mRatBN7.25140,282,041 - 140,325,815 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5140,282,043 - 140,325,815 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5142,978,393 - 143,022,296 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05144,748,226 - 144,792,128 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05144,749,167 - 144,793,073 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05146,023,695 - 146,069,623 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5146,023,696 - 146,069,670 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05149,782,636 - 149,824,585 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5138,773,459 - 138,816,356 (-)NCBICelera
Cytogenetic Map5q36NCBI
C1H1orf94
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21192,616,007 - 192,668,950 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11191,737,899 - 191,790,862 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0133,443,953 - 33,496,830 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1134,625,809 - 34,678,740 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl134,637,104 - 34,678,740 (+)Ensemblpanpan1.1panPan2
C15H1orf94
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1157,654,546 - 7,691,562 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha157,898,813 - 7,935,085 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0157,800,102 - 7,836,927 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl157,800,102 - 7,836,305 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1157,661,307 - 7,697,713 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0157,711,361 - 7,747,758 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0157,726,152 - 7,762,581 (-)NCBIUU_Cfam_GSD_1.0
CUNH1orf94
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505851,057,601 - 51,094,755 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647416,901,246 - 16,919,194 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647416,883,218 - 16,919,379 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C6H1orf94
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl690,440,734 - 90,483,003 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1690,440,933 - 90,482,347 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2684,319,482 - 84,361,372 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH1orf94
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12098,655,551 - 98,697,128 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2098,655,937 - 98,677,090 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603318,019,387 - 18,061,058 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH1orf94
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476417,191,977 - 17,230,320 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476417,192,065 - 17,230,287 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017484   ⟹   ENSCLAP00000017315
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545212,289,791 - 12,327,018 (+)Ensembl
RefSeq Acc Id: XM_005395119   ⟹   XP_005395176
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545212,288,967 - 12,325,948 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005395120   ⟹   XP_005395177
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545212,288,967 - 12,325,948 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005395121   ⟹   XP_005395178
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545212,288,967 - 12,325,948 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005395176 (Get FASTA)   NCBI Sequence Viewer  
  XP_005395177 (Get FASTA)   NCBI Sequence Viewer  
  XP_005395178 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017315
  ENSCLAP00000017315.1
Reference Protein Sequences
RefSeq Acc Id: XP_005395176   ⟸   XM_005395119
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005395177   ⟸   XM_005395120
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VNJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005395178   ⟸   XM_005395121
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000017315   ⟸   ENSCLAT00000017484


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011889 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017484 ENTREZGENE
  ENSCLAT00000017484.1 UniProtKB/TrEMBL
InterPro DUF4688 UniProtKB/TrEMBL
NCBI Gene LOC102010861 ENTREZGENE
PANTHER CDNA SEQUENCE CK137956 UniProtKB/TrEMBL
  PTHR35674 UniProtKB/TrEMBL
Pfam DUF4688 UniProtKB/TrEMBL
UniProt A0A8C2VNJ7 ENTREZGENE, UniProtKB/TrEMBL