Trim15 (tripartite motif containing 15) - Rat Genome Database

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Gene: Trim15 (tripartite motif containing 15) Chinchilla lanigera
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Symbol: Trim15
Name: tripartite motif containing 15
RGD ID: 8805524
Description: ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN innate immune response (ortholog); negative regulation of intracellular transport of viral material (ortholog); positive regulation of DNA-binding transcription factor activity (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: tripartite motif-containing protein 15
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955583277,564 - 283,422 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Trim15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955583277,564 - 283,422 (+)NCBIChiLan1.0ChiLan1.0
TRIM15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl630,163,206 - 30,172,693 (+)EnsemblGRCh38hg38GRCh38
GRCh38630,163,546 - 30,172,693 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37630,131,323 - 30,140,470 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,238,962 - 30,248,452 (+)NCBINCBI36hg18NCBI36
Build 34630,239,440 - 30,248,450NCBI
Celera631,729,242 - 31,738,732 (+)NCBI
Cytogenetic Map6p22.1NCBI
HuRef629,929,149 - 29,938,639 (+)NCBIHuRef
CHM1_1630,133,056 - 30,142,549 (+)NCBICHM1_1
Trim15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,171,582 - 37,179,066 (-)NCBIGRCm39mm39
GRCm39 Ensembl1737,171,583 - 37,178,102 (-)Ensembl
GRCm381736,860,690 - 36,867,367 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1736,860,691 - 36,867,210 (-)EnsemblGRCm38mm10GRCm38
MGSCv371736,997,636 - 37,004,155 (-)NCBIGRCm37mm9NCBIm37
MGSCv361736,468,744 - 36,475,240 (-)NCBImm8
Celera1740,279,930 - 40,286,447 (-)NCBICelera
Cytogenetic Map17B1NCBI
Trim15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2201,700,905 - 1,710,249 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl201,700,905 - 1,710,249 (+)Ensembl
Rnor_6.0202,194,293 - 2,203,636 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl202,194,709 - 2,201,668 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0204,231,049 - 4,240,392 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera202,409,650 - 2,418,993 (+)NCBICelera
Cytogenetic Map20p12NCBI
TRIM15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1630,610,348 - 30,619,833 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,610,348 - 30,619,826 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0629,939,261 - 29,949,706 (+)NCBIMhudiblu_PPA_v0panPan3
Trim15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,711,536 - 32,718,708 (+)NCBI
SpeTri2.0NW_004936723869,019 - 880,200 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,730,644 - 22,746,668 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,730,372 - 22,742,941 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2724,832,991 - 24,844,562 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11742,334,910 - 42,345,895 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604429,812,605 - 29,822,240 (+)NCBIVero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013509792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01075808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013509792   ⟹   XP_013365246
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955583277,564 - 283,422 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013365246 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013365246   ⟸   XM_013509792
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002056 ENTREZGENE
Ensembl Protein ENSCLAP00000002856 ENTREZGENE
Ensembl Transcript ENSCLAT00000002913 ENTREZGENE
NCBI Gene Trim15 ENTREZGENE