Ltb4r2 (leukotriene B4 receptor 2)

Gene: Ltb4r2 (leukotriene B4 receptor 2) Chinchilla lanigera

Analyze

Symbol:

Ltb4r2

Name:

leukotriene B4 receptor 2

RGD ID:

8805269

Description:

ENCODES a protein that exhibits leukotriene B4 receptor activity (ortholog); INVOLVED IN keratinocyte migration (ortholog); signal transduction (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); FOUND IN membrane (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	35,989,425 - 35,991,492 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	35,989,425 - 35,991,492 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Acute Lung Injury (ISO)

Brain-Lung-Thyroid Syndrome (ISO)

genetic disease (ISO)

lysinuric protein intolerance (ISO)

Specific Granule Deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

keratinocyte migration (ISO)

signal transduction (ISO)

Cellular Component

membrane (ISO)

nucleoplasm (ISO)

plasma membrane (ISO)

Molecular Function

leukotriene B4 receptor activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Ltb4r2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	35,989,425 - 35,991,492 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	35,989,425 - 35,991,492 (-)	NCBI	ChiLan1.0	ChiLan1.0

LTB4R2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	24,310,140 - 24,312,038 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	24,305,734 - 24,312,053 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	24,779,346 - 24,781,244 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	23,848,001 - 23,850,798 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	23,848,000 - 23,850,798	NCBI
Celera	14	4,643,986 - 4,645,888 (+)	NCBI		Celera
Cytogenetic Map	14	q12	NCBI
HuRef	14	4,894,524 - 4,896,426 (+)	NCBI		HuRef
CHM1_1	14	24,777,957 - 24,779,859 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	18,508,483 - 18,510,381 (+)	NCBI		T2T-CHM13v2.0

Ltb4r2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	55,995,379 - 56,001,523 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	55,998,885 - 56,002,595 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	55,757,922 - 55,764,066 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	55,761,428 - 55,765,138 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	56,380,761 - 56,381,843 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	54,715,995 - 54,717,077 (+)	NCBI		MGSCv36	mm8
Celera	14	53,566,960 - 53,568,042 (+)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI
cM Map	14	28.19	NCBI

Ltb4r2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	33,228,634 - 33,230,453 (+)	NCBI		GRCr8
mRatBN7.2	15	29,258,712 - 29,260,531 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	29,259,240 - 29,260,316 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	31,104,925 - 31,106,001 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	32,252,131 - 32,253,207 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	30,494,484 - 30,495,560 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	34,446,478 - 34,448,220 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	34,446,878 - 34,447,954 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	38,335,390 - 38,336,466 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	33,923,472 - 33,924,548 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	33,939,171 - 33,940,248 (+)	NCBI
Celera	15	28,833,900 - 28,834,976 (+)	NCBI		Celera
Cytogenetic Map	15	p13	NCBI

LTB4R2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	4,278,047 - 4,282,326 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	4,280,869 - 4,281,948 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	4,199,538 - 4,206,302 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	4,388,676 - 4,392,789 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	4,391,671 - 4,392,750 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	4,079,024 - 4,083,137 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	4,140,847 - 4,144,961 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	4,403,431 - 4,407,545 (+)	NCBI		UU_Cfam_GSD_1.0

Ltb4r2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	36,146,927 - 36,149,192 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936722	239,811 - 242,050 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LTB4R2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	74,978,876 - 74,983,768 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	74,978,871 - 74,983,811 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	80,249,814 - 80,254,577 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LTB4R2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	1,292,283 - 1,298,723 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	1,293,587 - 1,294,756 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666036	12,976,846 - 12,979,595 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ltb4r2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624820	8,192,441 - 8,196,375 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624820	8,192,441 - 8,196,472 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013510397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01010438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000014294 ⟹ ENSCLAP00000014136

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955409	35,989,425 - 35,991,492 (-)	Ensembl

RefSeq Acc Id:

XM_013510397 ⟹ XP_013365851

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955409	35,989,425 - 35,991,492 (-)	NCBI

Sequence:

show sequence

CACAGAAGCAGCAGCCTCACCCACTGCTGCTCCAGCTTTCAGCGTGCCCGGGCCTCTTGCAGGC
CGCAGCCCTGCCTGCTCCAGATGACCCCTGTAGGAGATGAAGAATGACCGTCTGCTACAGTCCC
CCTGGGAACGAGACGCTGCTGAGCTGGAAGGCCTCGCGGGCCACAGGCTCTGCCTTTCTGCTGC
TGGCCGCGCTGCTAGGACTGCCCGGAAATGGCTTCGTGGTGTGGAGCTTGGCGGGCTGGCGGCC
CGCACGGGGACGGCCGCTGGCGGCCACGCTTGTGCTGCACCTGGCGCTGGCTGACGGCGCGGTG
CTGCTGCTCACGCCGCTATTCGTGGTCTTCCTGGTCCGGCAGACCTGGCCGCTGGGCCAGGCGG
GCTGCAAGGCGGTGTACTACGTGTGCGCGCTCAGCATGTACGCCAGCGTGCTGCTCACCAGCCT
GCTCAGCCTGCAGCGCTGCCTCGCCGTCACCCGCCCCTTCCTGGCACCCCGGCTGCGCAGCCCG
GCCCTGGCCCGCTGCCTGCTGCTGGCAGTATGGCTGGCCGCGCTGCTGCTCGCGGTCCCCGCCG
CCGTCTACCGCCACCTCTGGGGCGGCCGCGTGTGCCAGCTGTGCCACCCATCGCCCGCCCACGC
CGCTGCGCACCTGAGCCTGGAGACTCTGACTGCCTTCGTGCTTCCTTTTGGGCTGATGCTGGTC
TGCTACAGCGTGACTCTGGCGCGGCTGTGGGGAGCCCGCTGGGGCTCCGGGCGGCAAGGTGCGC
GGGTGGGCCGGCTGGTGAGCGCCATTGTGCTGTCCTTTGGCTTGCTCTGGGCCCCCTACCACAC
GGTCAACCTTCTGCAAGCCCTGGCCGCGCTCTCCCCGCCTGAAGGGGCCTTGGCAAGGCTGGGT
GGGGCCGGACAGGCAGCGCGGGCTGGAACCACGGCCTTGGCCTTCTTCAGCTCCAGCGTCAACC
CGGTGCTCTACGTCTTCACCGCTGGGGACCTGCTGCCTCGGGCTGGTCCTCGTTTCCTCACGCG
GCTCTTCGAGGGCTCCTGGGAAGCCCGAGGGGCCAGCCGCTCTAGGGAGGGTACCATGGAGCTC
CGAACTACTCCTCGGCTGAAAGTGGTGGGGCAGGTTGGAGGCAATGGAGACCCCGGGGGCGGGC
TGAAGAGGGGCAGTCAAGAGTGGGATCCTTGACGCTAAACCCTGCACCGGGCCTGCTCTGCCCT
GAAACTTTCCATCCCCCCTGGAATTCACCACTCTGGGGCATTTGGGAATCCTTCTCTGAATACA
GTTTGGATTTGGCTGAGCAGGATCATGACACACTTGGGACAGGCCCAGAGTCCTCCAAACTGAG
GGATTGTGAGGGTGGATACCCCATGTTAAAAATATCGTGTTCTTGGAGGTTGGCGTGTACCCAT
GTGCTGGCTGGCATTGCTCATCTGTTTCCAGTAGCTCTTGTGAAATACACGGGAAGCCATCAGA
TGATGGCTTAAATGTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_013365851	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000014136
	ENSCLAP00000014136.1

RefSeq Acc Id:

XP_013365851 ⟸ XM_013510397

- UniProtKB:

A0A8C2VDV5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTVCYSPPGNETLLSWKASRATGSAFLLLAALLGLPGNGFVVWSLAGWRPARGRPLAATLVLHL
ALADGAVLLLTPLFVVFLVRQTWPLGQAGCKAVYYVCALSMYASVLLTSLLSLQRCLAVTRPFL
APRLRSPALARCLLLAVWLAALLLAVPAAVYRHLWGGRVCQLCHPSPAHAAAHLSLETLTAFVL
PFGLMLVCYSVTLARLWGARWGSGRQGARVGRLVSAIVLSFGLLWAPYHTVNLLQALAALSPPE
GALARLGGAGQAARAGTTALAFFSSSVNPVLYVFTAGDLLPRAGPRFLTRLFEGSWEARGASRS
REGTMELRTTPRLKVVGQVGGNGDPGGGLKRGSQEWDP

hide sequence

RefSeq Acc Id:

ENSCLAP00000014136 ⟸ ENSCLAT00000014294

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000009760	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000014294	ENTREZGENE
	ENSCLAT00000014294.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Leukotriene_B4_rcpt	UniProtKB/TrEMBL
	Leukotriene_B4_typ-2_rcpt	UniProtKB/TrEMBL
NCBI Gene	Ltb4r2	ENTREZGENE
PANTHER	G-PROTEIN COUPLED RECEPTOR	UniProtKB/TrEMBL
	LEUKOTRIENE B4 RECEPTOR 2	UniProtKB/TrEMBL
Pfam	7tm_1	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	LTB2RECEPTOR	UniProtKB/TrEMBL
	LTBRECEPTOR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A8C2VDV5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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