Arpc2 (actin related protein 2/3 complex subunit 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Arpc2 (actin related protein 2/3 complex subunit 2) Chinchilla lanigera
Analyze
Symbol: Arpc2
Name: actin related protein 2/3 complex subunit 2
RGD ID: 8805080
Description: ENCODES a protein that exhibits actin filament binding (ortholog); AP-1 adaptor complex binding (ortholog); Arp2/3 complex binding (ortholog); INVOLVED IN Arp2/3 complex-mediated actin nucleation (ortholog); cellular response to epidermal growth factor stimulus (ortholog); cellular response to hydrogen peroxide (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; platelet-derived growth factor signaling pathway; Rab family mediated signaling pathway; ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cerebrotendinous xanthomatosis (ortholog); colorectal adenocarcinoma (ortholog); FOUND IN actin filament branch point (ortholog); apical dendrite (ortholog); Arp2/3 protein complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: actin related protein 2/3 complex, subunit 2, 34kDa; actin-related protein 2/3 complex subunit 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545315,116,093 - 15,146,041 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545315,117,978 - 15,145,895 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Arpc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545315,116,093 - 15,146,041 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545315,117,978 - 15,145,895 (-)NCBIChiLan1.0ChiLan1.0
ARPC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,217,189 - 218,254,348 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,217,141 - 218,254,356 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,081,912 - 219,119,071 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,790,119 - 218,827,316 (+)NCBINCBI36Build 36hg18NCBI36
Build 342218,907,379 - 218,944,576NCBI
Celera2212,848,449 - 212,885,654 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2210,934,975 - 210,972,151 (+)NCBIHuRef
CHM1_12219,088,288 - 219,125,558 (+)NCBICHM1_1
T2T-CHM13v2.02218,702,891 - 218,740,055 (+)NCBIT2T-CHM13v2.0
Arpc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,275,656 - 74,307,368 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,275,243 - 74,307,368 (+)EnsemblGRCm39 Ensembl
GRCm38174,236,490 - 74,268,209 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,236,084 - 74,268,209 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,283,124 - 74,314,787 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,169,706 - 74,201,416 (+)NCBIMGSCv36mm8
Celera174,797,918 - 74,829,569 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map138.49NCBI
Arpc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,269,884 - 83,300,610 (+)NCBIGRCr8
mRatBN7.2975,820,782 - 75,851,471 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl975,820,770 - 75,851,471 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,271,669 - 84,296,962 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,400,588 - 89,425,881 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0987,786,805 - 87,812,098 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0981,518,163 - 81,548,871 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,518,176 - 81,548,871 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,285,084 - 81,315,844 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4973,563,617 - 73,594,263 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1973,710,470 - 73,741,240 (+)NCBI
Celera973,397,334 - 73,427,983 (+)NCBICelera
Cytogenetic Map9q33NCBI
ARPC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213120,849,631 - 120,886,474 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B120,865,788 - 120,901,441 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B105,478,035 - 105,513,665 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,076,356 - 224,111,643 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,076,356 - 224,111,643 (+)Ensemblpanpan1.1panPan2
ARPC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13724,914,389 - 24,935,998 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3724,914,642 - 24,935,824 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3725,726,741 - 25,756,145 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03724,922,615 - 24,952,042 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3724,922,535 - 24,952,248 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13724,827,991 - 24,857,388 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03724,762,177 - 24,791,643 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03724,781,773 - 24,811,231 (+)NCBIUU_Cfam_GSD_1.0
Arpc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,415,593 - 174,443,979 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936569758,199 - 786,760 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936569758,358 - 786,995 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARPC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,297,025 - 120,328,542 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,297,122 - 120,328,795 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215133,376,755 - 133,421,942 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARPC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,098,275 - 104,144,043 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,098,402 - 104,135,791 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604095,260,455 - 95,302,739 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arpc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248236,774,855 - 6,804,219 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000012180   ⟹   ENSCLAP00000012039
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545315,116,093 - 15,145,841 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000012181   ⟹   ENSCLAP00000012040
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545315,118,396 - 15,145,324 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000012182   ⟹   ENSCLAP00000012041
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545315,145,472 - 15,146,041 (-)Ensembl
RefSeq Acc Id: XM_005395662   ⟹   XP_005395719
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545315,117,978 - 15,145,841 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005395663   ⟹   XP_005395720
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545315,117,978 - 15,145,895 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005395719 (Get FASTA)   NCBI Sequence Viewer  
  XP_005395720 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012039
  ENSCLAP00000012039.1
  ENSCLAP00000012040
  ENSCLAP00000012040.1
  ENSCLAP00000012041.1
RefSeq Acc Id: XP_005395720   ⟸   XM_005395663
- UniProtKB: A0A8C2VFR5 (UniProtKB/TrEMBL),   A0A8C2VAF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005395719   ⟸   XM_005395662
- UniProtKB: A0A8C2VFR5 (UniProtKB/TrEMBL),   A0A8C2VAF7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000012040   ⟸   ENSCLAT00000012181
Ensembl Acc Id: ENSCLAP00000012039   ⟸   ENSCLAT00000012180
Ensembl Acc Id: ENSCLAP00000012041   ⟸   ENSCLAT00000012182


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008305 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012180 ENTREZGENE
  ENSCLAT00000012180.1 UniProtKB/TrEMBL
  ENSCLAT00000012181 ENTREZGENE
  ENSCLAT00000012181.1 UniProtKB/TrEMBL
  ENSCLAT00000012182.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1460.20 UniProtKB/TrEMBL
InterPro ARPC2 UniProtKB/TrEMBL
  ARPC2/4 UniProtKB/TrEMBL
NCBI Gene Arpc2 ENTREZGENE
PANTHER ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 2 UniProtKB/TrEMBL
  PTHR12058 UniProtKB/TrEMBL
Pfam P34-Arc UniProtKB/TrEMBL
Superfamily-SCOP SSF69645 UniProtKB/TrEMBL
UniProt A0A8C2VAF7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VCM9_CHILA UniProtKB/TrEMBL
  A0A8C2VFR5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Arpc2  actin related protein 2/3 complex subunit 2    actin related protein 2/3 complex, subunit 2, 34kDa  Symbol and/or name change 5135510 APPROVED