Troap (trophinin associated protein)

Gene: Troap (trophinin associated protein) Chinchilla lanigera

Analyze

Symbol:

Troap

Name:

trophinin associated protein

RGD ID:

8804296

Description:

ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tastin

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955500	8,129,874 - 8,137,263 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955500	8,129,031 - 8,137,235 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Troap
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955500	8,129,874 - 8,137,263 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955500	8,129,031 - 8,137,235 (+)	NCBI	ChiLan1.0	ChiLan1.0

TROAP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	49,323,255 - 49,331,731 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	49,323,236 - 49,331,731 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	49,717,038 - 49,725,514 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	48,003,238 - 48,011,781 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	48,003,328 - 48,011,781	NCBI
Celera	12	48,510,276 - 48,518,819 (+)	NCBI		Celera
Cytogenetic Map	12	q13.12	NCBI
HuRef	12	46,747,401 - 46,755,945 (+)	NCBI		HuRef
CHM1_1	12	49,682,668 - 49,691,211 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	49,284,317 - 49,293,921 (+)	NCBI		T2T-CHM13v2.0

Troap
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	98,972,854 - 98,981,290 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	98,972,456 - 98,981,290 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	99,074,973 - 99,083,409 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	99,074,575 - 99,083,409 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	98,905,404 - 98,913,840 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	98,902,680 - 98,911,442 (+)	NCBI		MGSCv36	mm8
Celera	15	101,229,127 - 101,237,671 (+)	NCBI		Celera
Cytogenetic Map	15	F1	NCBI
cM Map	15	55.8	NCBI

Troap
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	132,111,892 - 132,121,296 (+)	NCBI		GRCr8
mRatBN7.2	7	130,233,534 - 130,242,369 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	130,234,544 - 130,242,365 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	132,044,775 - 132,052,569 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	134,270,349 - 134,278,143 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	134,182,856 - 134,190,650 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	140,758,576 - 140,766,423 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	140,758,615 - 140,766,423 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	115,263,516 - 115,271,364 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	137,852,698 - 137,860,157 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	137,934,261 - 137,936,594 (+)	NCBI
Celera	7	126,719,296 - 126,727,104 (+)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

TROAP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	44,853,584 - 44,863,193 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	44,850,242 - 44,859,954 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	39,420,106 - 39,428,676 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	40,305,833 - 40,314,800 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	40,305,833 - 40,314,800 (-)	Ensembl	panpan1.1		panPan2

TROAP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	5,282,495 - 5,289,106 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	5,282,497 - 5,289,124 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	40,967,645 - 40,974,255 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	5,333,852 - 5,340,458 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	27	5,299,238 - 5,305,848 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	5,288,737 - 5,295,343 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	41,360,748 - 41,367,359 (+)	NCBI		UU_Cfam_GSD_1.0

Troap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	66,078,412 - 66,086,191 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936512	7,079,485 - 7,086,382 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TROAP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	15,300,687 - 15,307,679 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	15,300,688 - 15,307,681 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	15,707,114 - 15,714,116 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TROAP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	45,552,369 - 45,560,134 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	45,553,251 - 45,560,123 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	200,568,328 - 200,576,931 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Troap
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624816	2,853,715 - 2,861,346 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624816	2,853,799 - 2,861,374 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005406696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005406697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005406698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005406699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01063981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01084874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000004855 ⟹ ENSCLAP00000004766

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955500	8,129,874 - 8,137,263 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000004856 ⟹ ENSCLAP00000004767

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955500	8,129,874 - 8,137,263 (+)	Ensembl

RefSeq Acc Id:

XM_005406696 ⟹ XP_005406753

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955500	8,129,031 - 8,137,235 (+)	NCBI

Sequence:

show sequence

CCGGCGCGCTCCGCCAGTGCGGAAGCGCTGCTGTCTCGGGGGCACGGCTTTCCTTAAAGGTCTG
GAATGCCACCCCACAGCTCCGCCGCGCCACGGCCAGAGGCGAGCTCTGGGCTCGCAGGAGCCAC
TACCACCCCCGCGGCAGCGCGGACGGCCAGCGTTCTCACCACGCCGCCGCGCCTCGCTGCGGAG
GACCGGCCCCGCCCGGCCGCGAGGTCTCGCGAGAGCGCGCTAGCGCCCGTTGCTGCCCGGACTC
GGATCGCCGCGCCTTCCACGTCCTCAGAACCGCCCCTCCTACCCTTTTCCCCGCCTTCCAGTCG
CGCTCCACTCTCGGATTGGCTGATGGGGCCGGCCGCCATGACCACCATCCAAGACAGTAAGGAT
CCCCTCCTCCGGGGTGTGTCTCCTACGCCCAGCAAGATCCCAGTACGTTCTCAGAGACGCCCGC
CTTTCCTCGCAGTCAAACCGAGCGCCGAGGACCAGGAGAACCAAGATCCAGGGAGTCTGGTGCA
GAAGCCGCAGCTCAGTACTCAACGTACCCTTGTTGACTCAGCAGGCCCCAGGTCGAAAGCCACT
CACCAAACAGAGAAATCACAAAAGTCGATGGCGATCACTCAGCTTCGGAACCCCCTGGAGGAGC
TCAGGCCTAGCCCGGGGGGACAAAATGCGGGGCTTGGGCCCCCTCCACAGACAGAAGCTCCAGG
GCCCATAGAGTTTGTGGCTGACCCTGCAGCCCTGGCCACCATCCTGTCAGGTGAGGGGGTGAAG
AGCTGTCCAATGGGGCGCCAGTCCAGCCTGGCTCAGAGAGTACTGATTCGAGGGAGCCAGGGAG
GTGCCATCCGGCGGGGCCAGAATGCTCGGGCCTCTGCGTACTTGGCCTCCAGAACCCCCATCCA
CCAACCAGGCCCTGCCAGGGCGTCCTGCTTCTCAAGGCTGGAGGGATCTGGACCCCGAGGTCGG
ACTTTGTGCCCCGAGAGGCTCCAGGCTCTGGTTCCACCTTCAGGACCTTCCTTTCACCCCTCCA
CCCGCCCTAGTTTACAGGAGCTCAGAAGAGAGACAGGGGGCAGCATCCGGACTGCTTCCGTGAG
CCAGGTCTCAGGATTGCTCCTGCAAACCCCTGTGCAGCCCGCTTCTCTCCCTGAAGAACACGAA
AGTGTCCCTCATTCAGATGAAGAAGGAGGGACCCTTCTAGGTCTGGCCCAGCGAGTACCTTTAG
GAGAAACCAGAGAGACAGCACACCCCAGGGATGCCCATGACTCCCGCCTGATGGCCTCCCCTGC
CCCTGTGGCCCAGCCCATGCCTGGCCGTGTGGTGCCACCTTCTGTCACCCACCCATCACCCTTT
GGACGGGCTCAGCGTGTACCCTCCCCTGGCATCCCAGCTCTGACTTCATATTCATTGCTGCGGC
GTCTTGCCATCCGACCCAAAACCCAGTTCACTCCATCCACCCCCAGAGCTCAGCGGGCCCGATG
GTTGAGTGGCCTCACCCCTCAGTCCTGTCCTGAAGAGCCTGCTCTGCCCTGGGAGCAGATTGCT
GTACGGTTGTTTGACCAGGACAGTGGTGTAAGGTTGCAGGAGCAGCCTGGCAGACTAGCTGTGA
CAAGTCCTGGATCACACCCGTATGGAGCCCTCAACTTTCAGGAGCTAAAAATGCAGCGCATCAG
TATCCTGCAGCAGTTACTGCGCCAGGAGGTGGAAGGGCTGGCAGTGGGCAAGTATGCCCCCCTT
ACTGGAGGCTGCTCTCTGGATATGGTTGAACTTCAGCCCCTGCTGGCTGACATTTCTCGGACTC
TGAATGCCCCAGAGCAGAACCCTGGGACGTCCCACCTTCCTGGACTGCCACAACACTCTGAGCA
GCCGGAGCCCTGCCCTCCAGAGGACTGCAGGGAAACACAGCCCTGCTCTGGGGCAATGCAACCA
GAGCGAGAGGTGACACAGCCATACCCACCAACTGAGCCAGGGCCTCCAGAGTCTTGCTGTAGGG
CCAGGCCAGAGACAGCGGAGCCCTCCTCCCAGGAGCAGCCTGAGGAAGCCAAGCCCTGCCCCCC
AGCAGAGCCTGCACCCCTTCAGCCTAGGCCCCAGGGACAGTCTGCATCCCAAGAGGCCTGCGCC
AGGGTAGGGTTGGGGGCATCTGATGCCTGCTACCTGGAACCAGAATGCCTAGAGTCCAGTCCAT
GGAGCTGCTGCAGCCAGGGGGCTCCAGCAACCACCGACCTGACCTTCTCTTCCCAACGCCCCCT
TTGTGCCAGCCCCCCTATCTGCTCACTTCAGTCTCCAAGGCCCCCGATAGGCCAGGCAGGTCCT
GGCAGTCTGGCCCCTCGAACCATGGCCCTGAGGCAGCGCCTCAAAGCGTGTCTCACTGCTATCC
ACTGCTCCCATGAGGCTCGTCTGGACGATGAGTGTGCCTTTTACACCAGCCGAGTCCCTCCCCC
AGGGCCCACTCGGGTCTGCACCAACCCTGTGGCCACAGTGCTCGAATGGCAAGATGCCCTGGGT
TTCATTCCGGTTGTTTCTGCGGCCCCACAGAGCTCTCCATCCTGAGGCTCCCACTCTCCTGGCT
CACCCCTTCCCTTTAGCCCTTATTTATTTGGTCTTCCCATGGGACCGGGGGCCAACACTCTTGT
ATCCTTTAATAAAGTTTCTGCAGTGTCTGAATGGCCA

hide sequence

RefSeq Acc Id:

XM_005406697 ⟹ XP_005406754

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955500	8,129,395 - 8,137,235 (+)	NCBI

Sequence:

show sequence

TCCTTGCCAAAAAGCGGCTCCACAGCTAGTCTTTTTTCTGGACCCGCCTCCAAACCCCTCGGAT
TGGACCGCTGAGTCAGGCGTCACGAGCCTCCTCTGCACTCGGACAAACCAATCAGGATCTTGGC
GTATTTTACGAACTGGGGAAGTAGCAGCAGCAGAAATCCAAGAAACTTGGAGAGAAATCTAAAA
AAGTGGAGGCGACCGTGAAGGGTTCCCGGGACGGTGCGGCATAGGGATCCTGCAGGAAATGAGG
GCTGTGGGAGCCGCCATGACCACCATCCAAGACAGTAAGGATCCCCTCCTCCGGGGTGTGTCTC
CTACGCCCAGCAAGATCCCAGTACGTTCTCAGAGACGCCCGCCTTTCCTCGCAGTCAAACCGAG
CGCCGAGGACCAGGAGAACCAAGATCCAGGGAGTCTGGTGCAGAAGCCGCAGCTCAGTACTCAA
CGTACCCTTGTTGACTCAGCAGGCCCCAGGTCGAAAGCCACTCACCAAACAGAGAAATCACAAA
AGTCGATGGCGATCACTCAGCTTCGGAACCCCCTGGAGGAGCTCAGGCCTAGCCCGGGGGGACA
AAATGCGGGGCTTGGGCCCCCTCCACAGACAGAAGCTCCAGGGCCCATAGAGTTTGTGGCTGAC
CCTGCAGCCCTGGCCACCATCCTGTCAGGTGAGGGGGTGAAGAGCTGTCCAATGGGGCGCCAGT
CCAGCCTGGCTCAGAGAGTACTGATTCGAGGGAGCCAGGGAGGTGCCATCCGGCGGGGCCAGAA
TGCTCGGGCCTCTGCGTACTTGGCCTCCAGAACCCCCATCCACCAACCAGGCCCTGCCAGGGCG
TCCTGCTTCTCAAGGCTGGAGGGATCTGGACCCCGAGGTCGGACTTTGTGCCCCGAGAGGCTCC
AGGCTCTGGTTCCACCTTCAGGACCTTCCTTTCACCCCTCCACCCGCCCTAGTTTACAGGAGCT
CAGAAGAGAGACAGGGGGCAGCATCCGGACTGCTTCCGTGAGCCAGGTCTCAGGATTGCTCCTG
CAAACCCCTGTGCAGCCCGCTTCTCTCCCTGAAGAACACGAAAGTGTCCCTCATTCAGATGAAG
AAGGAGGGACCCTTCTAGGTCTGGCCCAGCGAGTACCTTTAGGAGAAACCAGAGAGACAGCACA
CCCCAGGGATGCCCATGACTCCCGCCTGATGGCCTCCCCTGCCCCTGTGGCCCAGCCCATGCCT
GGCCGTGTGGTGCCACCTTCTGTCACCCACCCATCACCCTTTGGACGGGCTCAGCGTGTACCCT
CCCCTGGCATCCCAGCTCTGACTTCATATTCATTGCTGCGGCGTCTTGCCATCCGACCCAAAAC
CCAGTTCACTCCATCCACCCCCAGAGCTCAGCGGGCCCGATGGTTGAGTGGCCTCACCCCTCAG
TCCTGTCCTGAAGAGCCTGCTCTGCCCTGGGAGCAGATTGCTGTACGGTTGTTTGACCAGGACA
GTGGTGTAAGGTTGCAGGAGCAGCCTGGCAGACTAGCTGTGACAAGTCCTGGATCACACCCGTA
TGGAGCCCTCAACTTTCAGGAGCTAAAAATGCAGCGCATCAGTATCCTGCAGCAGTTACTGCGC
CAGGAGGTGGAAGGGCTGGCAGTGGGCAAGTATGCCCCCCTTACTGGAGGCTGCTCTCTGGATA
TGGTTGAACTTCAGCCCCTGCTGGCTGACATTTCTCGGACTCTGAATGCCCCAGAGCAGAACCC
TGGGACGTCCCACCTTCCTGGACTGCCACAACACTCTGAGCAGCCGGAGCCCTGCCCTCCAGAG
GACTGCAGGGAAACACAGCCCTGCTCTGGGGCAATGCAACCAGAGCGAGAGGTGACACAGCCAT
ACCCACCAACTGAGCCAGGGCCTCCAGAGTCTTGCTGTAGGGCCAGGCCAGAGACAGCGGAGCC
CTCCTCCCAGGAGCAGCCTGAGGAAGCCAAGCCCTGCCCCCCAGCAGAGCCTGCACCCCTTCAG
CCTAGGCCCCAGGGACAGTCTGCATCCCAAGAGGCCTGCGCCAGGGTAGGGTTGGGGGCATCTG
ATGCCTGCTACCTGGAACCAGAATGCCTAGAGTCCAGTCCATGGAGCTGCTGCAGCCAGGGGGC
TCCAGCAACCACCGACCTGACCTTCTCTTCCCAACGCCCCCTTTGTGCCAGCCCCCCTATCTGC
TCACTTCAGTCTCCAAGGCCCCCGATAGGCCAGGCAGGTCCTGGCAGTCTGGCCCCTCGAACCA
TGGCCCTGAGGCAGCGCCTCAAAGCGTGTCTCACTGCTATCCACTGCTCCCATGAGGCTCGTCT
GGACGATGAGTGTGCCTTTTACACCAGCCGAGTCCCTCCCCCAGGGCCCACTCGGGTCTGCACC
AACCCTGTGGCCACAGTGCTCGAATGGCAAGATGCCCTGGGTTTCATTCCGGTTGTTTCTGCGG
CCCCACAGAGCTCTCCATCCTGAGGCTCCCACTCTCCTGGCTCACCCCTTCCCTTTAGCCCTTA
TTTATTTGGTCTTCCCATGGGACCGGGGGCCAACACTCTTGTATCCTTTAATAAAGTTTCTGCA
GTGTCTGAATGGCCA

hide sequence

RefSeq Acc Id:

XM_005406698 ⟹ XP_005406755

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955500	8,129,395 - 8,137,235 (+)	NCBI

Sequence:

show sequence

TCCTTGCCAAAAAGCGGCTCCACAGCTAGTCTTTTTTCTGGACCCGCCTCCAAACCCCTCGGAT
TGGACCGCTGAGTCAGGCGTCACGAGCCTCCTCTGCACTCGGACAAACCAATCAGGATCTTGGC
GTATTTTACGAACTGGGGAAGTAGCAGCAGCAGAAATCCAAGAAACTTGGAGAGAAATCTAAAA
AAGTGGAGGCGACCGTGAAGGGTTCCCGGGACGCCGCCATGACCACCATCCAAGACAGTAAGGA
TCCCCTCCTCCGGGGTGTGTCTCCTACGCCCAGCAAGATCCCAGTACGTTCTCAGAGACGCCCG
CCTTTCCTCGCAGTCAAACCGAGCGCCGAGGACCAGGAGAACCAAGATCCAGGGAGTCTGGTGC
AGAAGCCGCAGCTCAGTACTCAACGTACCCTTGTTGACTCAGCAGGCCCCAGGTCGAAAGCCAC
TCACCAAACAGAGAAATCACAAAAGTCGATGGCGATCACTCAGCTTCGGAACCCCCTGGAGGAG
CTCAGGCCTAGCCCGGGGGGACAAAATGCGGGGCTTGGGCCCCCTCCACAGACAGAAGCTCCAG
GGCCCATAGAGTTTGTGGCTGACCCTGCAGCCCTGGCCACCATCCTGTCAGGTGAGGGGGTGAA
GAGCTGTCCAATGGGGCGCCAGTCCAGCCTGGCTCAGAGAGTACTGATTCGAGGGAGCCAGGGA
GGTGCCATCCGGCGGGGCCAGAATGCTCGGGCCTCTGCGTACTTGGCCTCCAGAACCCCCATCC
ACCAACCAGGCCCTGCCAGGGCGTCCTGCTTCTCAAGGCTGGAGGGATCTGGACCCCGAGGTCG
GACTTTGTGCCCCGAGAGGCTCCAGGCTCTGGTTCCACCTTCAGGACCTTCCTTTCACCCCTCC
ACCCGCCCTAGTTTACAGGAGCTCAGAAGAGAGACAGGGGGCAGCATCCGGACTGCTTCCGTGA
GCCAGGTCTCAGGATTGCTCCTGCAAACCCCTGTGCAGCCCGCTTCTCTCCCTGAAGAACACGA
AAGTGTCCCTCATTCAGATGAAGAAGGAGGGACCCTTCTAGGTCTGGCCCAGCGAGTACCTTTA
GGAGAAACCAGAGAGACAGCACACCCCAGGGATGCCCATGACTCCCGCCTGATGGCCTCCCCTG
CCCCTGTGGCCCAGCCCATGCCTGGCCGTGTGGTGCCACCTTCTGTCACCCACCCATCACCCTT
TGGACGGGCTCAGCGTGTACCCTCCCCTGGCATCCCAGCTCTGACTTCATATTCATTGCTGCGG
CGTCTTGCCATCCGACCCAAAACCCAGTTCACTCCATCCACCCCCAGAGCTCAGCGGGCCCGAT
GGTTGAGTGGCCTCACCCCTCAGTCCTGTCCTGAAGAGCCTGCTCTGCCCTGGGAGCAGATTGC
TGTACGGTTGTTTGACCAGGACAGTGGTGTAAGGTTGCAGGAGCAGCCTGGCAGACTAGCTGTG
ACAAGTCCTGGATCACACCCGTATGGAGCCCTCAACTTTCAGGAGCTAAAAATGCAGCGCATCA
GTATCCTGCAGCAGTTACTGCGCCAGGAGGTGGAAGGGCTGGCAGTGGGCAAGTATGCCCCCCT
TACTGGAGGCTGCTCTCTGGATATGGTTGAACTTCAGCCCCTGCTGGCTGACATTTCTCGGACT
CTGAATGCCCCAGAGCAGAACCCTGGGACGTCCCACCTTCCTGGACTGCCACAACACTCTGAGC
AGCCGGAGCCCTGCCCTCCAGAGGACTGCAGGGAAACACAGCCCTGCTCTGGGGCAATGCAACC
AGAGCGAGAGGTGACACAGCCATACCCACCAACTGAGCCAGGGCCTCCAGAGTCTTGCTGTAGG
GCCAGGCCAGAGACAGCGGAGCCCTCCTCCCAGGAGCAGCCTGAGGAAGCCAAGCCCTGCCCCC
CAGCAGAGCCTGCACCCCTTCAGCCTAGGCCCCAGGGACAGTCTGCATCCCAAGAGGCCTGCGC
CAGGGTAGGGTTGGGGGCATCTGATGCCTGCTACCTGGAACCAGAATGCCTAGAGTCCAGTCCA
TGGAGCTGCTGCAGCCAGGGGGCTCCAGCAACCACCGACCTGACCTTCTCTTCCCAACGCCCCC
TTTGTGCCAGCCCCCCTATCTGCTCACTTCAGTCTCCAAGGCCCCCGATAGGCCAGGCAGGTCC
TGGCAGTCTGGCCCCTCGAACCATGGCCCTGAGGCAGCGCCTCAAAGCGTGTCTCACTGCTATC
CACTGCTCCCATGAGGCTCGTCTGGACGATGAGTGTGCCTTTTACACCAGCCGAGTCCCTCCCC
CAGGGCCCACTCGGGTCTGCACCAACCCTGTGGCCACAGTGCTCGAATGGCAAGATGCCCTGGG
TTTCATTCCGGTTGTTTCTGCGGCCCCACAGAGCTCTCCATCCTGAGGCTCCCACTCTCCTGGC
TCACCCCTTCCCTTTAGCCCTTATTTATTTGGTCTTCCCATGGGACCGGGGGCCAACACTCTTG
TATCCTTTAATAAAGTTTCTGCAGTGTCTGAATGGCCA

hide sequence

RefSeq Acc Id:

XM_005406699 ⟹ XP_005406756

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955500	8,129,395 - 8,137,235 (+)	NCBI

Sequence:

show sequence

TCCTTGCCAAAAAGCGGCTCCACAGCTAGTCTTTTTTCTGGACCCGCCTCCAAACCCCTCGGAT
TGGACCGCTGAGTCAGGCGTCACGAGCCTCCTCTGCACTCGGACAAACCAATCAGGATCTTGGC
GTATTTTACGAACTGGCCGCCATGACCACCATCCAAGACAGTAAGGATCCCCTCCTCCGGGGTG
TGTCTCCTACGCCCAGCAAGATCCCAGTACGTTCTCAGAGACGCCCGCCTTTCCTCGCAGTCAA
ACCGAGCGCCGAGGACCAGGAGAACCAAGATCCAGGGAGTCTGGTGCAGAAGCCGCAGCTCAGT
ACTCAACGTACCCTTGTTGACTCAGCAGGCCCCAGGTCGAAAGCCACTCACCAAACAGAGAAAT
CACAAAAGTCGATGGCGATCACTCAGCTTCGGAACCCCCTGGAGGAGCTCAGGCCTAGCCCGGG
GGGACAAAATGCGGGGCTTGGGCCCCCTCCACAGACAGAAGCTCCAGGGCCCATAGAGTTTGTG
GCTGACCCTGCAGCCCTGGCCACCATCCTGTCAGGTGAGGGGGTGAAGAGCTGTCCAATGGGGC
GCCAGTCCAGCCTGGCTCAGAGAGTACTGATTCGAGGGAGCCAGGGAGGTGCCATCCGGCGGGG
CCAGAATGCTCGGGCCTCTGCGTACTTGGCCTCCAGAACCCCCATCCACCAACCAGGCCCTGCC
AGGGCGTCCTGCTTCTCAAGGCTGGAGGGATCTGGACCCCGAGGTCGGACTTTGTGCCCCGAGA
GGCTCCAGGCTCTGGTTCCACCTTCAGGACCTTCCTTTCACCCCTCCACCCGCCCTAGTTTACA
GGAGCTCAGAAGAGAGACAGGGGGCAGCATCCGGACTGCTTCCGTGAGCCAGGTCTCAGGATTG
CTCCTGCAAACCCCTGTGCAGCCCGCTTCTCTCCCTGAAGAACACGAAAGTGTCCCTCATTCAG
ATGAAGAAGGAGGGACCCTTCTAGGTCTGGCCCAGCGAGTACCTTTAGGAGAAACCAGAGAGAC
AGCACACCCCAGGGATGCCCATGACTCCCGCCTGATGGCCTCCCCTGCCCCTGTGGCCCAGCCC
ATGCCTGGCCGTGTGGTGCCACCTTCTGTCACCCACCCATCACCCTTTGGACGGGCTCAGCGTG
TACCCTCCCCTGGCATCCCAGCTCTGACTTCATATTCATTGCTGCGGCGTCTTGCCATCCGACC
CAAAACCCAGTTCACTCCATCCACCCCCAGAGCTCAGCGGGCCCGATGGTTGAGTGGCCTCACC
CCTCAGTCCTGTCCTGAAGAGCCTGCTCTGCCCTGGGAGCAGATTGCTGTACGGTTGTTTGACC
AGGACAGTGGTGTAAGGTTGCAGGAGCAGCCTGGCAGACTAGCTGTGACAAGTCCTGGATCACA
CCCGTATGGAGCCCTCAACTTTCAGGAGCTAAAAATGCAGCGCATCAGTATCCTGCAGCAGTTA
CTGCGCCAGGAGGTGGAAGGGCTGGCAGTGGGCAAGTATGCCCCCCTTACTGGAGGCTGCTCTC
TGGATATGGTTGAACTTCAGCCCCTGCTGGCTGACATTTCTCGGACTCTGAATGCCCCAGAGCA
GAACCCTGGGACGTCCCACCTTCCTGGACTGCCACAACACTCTGAGCAGCCGGAGCCCTGCCCT
CCAGAGGACTGCAGGGAAACACAGCCCTGCTCTGGGGCAATGCAACCAGAGCGAGAGGTGACAC
AGCCATACCCACCAACTGAGCCAGGGCCTCCAGAGTCTTGCTGTAGGGCCAGGCCAGAGACAGC
GGAGCCCTCCTCCCAGGAGCAGCCTGAGGAAGCCAAGCCCTGCCCCCCAGCAGAGCCTGCACCC
CTTCAGCCTAGGCCCCAGGGACAGTCTGCATCCCAAGAGGCCTGCGCCAGGGTAGGGTTGGGGG
CATCTGATGCCTGCTACCTGGAACCAGAATGCCTAGAGTCCAGTCCATGGAGCTGCTGCAGCCA
GGGGGCTCCAGCAACCACCGACCTGACCTTCTCTTCCCAACGCCCCCTTTGTGCCAGCCCCCCT
ATCTGCTCACTTCAGTCTCCAAGGCCCCCGATAGGCCAGGCAGGTCCTGGCAGTCTGGCCCCTC
GAACCATGGCCCTGAGGCAGCGCCTCAAAGCGTGTCTCACTGCTATCCACTGCTCCCATGAGGC
TCGTCTGGACGATGAGTGTGCCTTTTACACCAGCCGAGTCCCTCCCCCAGGGCCCACTCGGGTC
TGCACCAACCCTGTGGCCACAGTGCTCGAATGGCAAGATGCCCTGGGTTTCATTCCGGTTGTTT
CTGCGGCCCCACAGAGCTCTCCATCCTGAGGCTCCCACTCTCCTGGCTCACCCCTTCCCTTTAG
CCCTTATTTATTTGGTCTTCCCATGGGACCGGGGGCCAACACTCTTGTATCCTTTAATAAAGTT
TCTGCAGTGTCTGAATGGCCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005406753	(Get FASTA)	NCBI Sequence Viewer
	XP_005406754	(Get FASTA)	NCBI Sequence Viewer
	XP_005406755	(Get FASTA)	NCBI Sequence Viewer
	XP_005406756	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000004766.1
	ENSCLAP00000004767
	ENSCLAP00000004767.1

RefSeq Acc Id:	XP_005406753 ⟸ XM_005406696
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2US64 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPPHSSAAPRPEASSGLAGATTTPAAARTASVLTTPPRLAAEDRPRPAARSRESALAPVAARTR IAAPSTSSEPPLLPFSPPSSRAPLSDWLMGPAAMTTIQDSKDPLLRGVSPTPSKIPVRSQRRPP FLAVKPSAEDQENQDPGSLVQKPQLSTQRTLVDSAGPRSKATHQTEKSQKSMAITQLRNPLEEL RPSPGGQNAGLGPPPQTEAPGPIEFVADPAALATILSGEGVKSCPMGRQSSLAQRVLIRGSQGG AIRRGQNARASAYLASRTPIHQPGPARASCFSRLEGSGPRGRTLCPERLQALVPPSGPSFHPST RPSLQELRRETGGSIRTASVSQVSGLLLQTPVQPASLPEEHESVPHSDEEGGTLLGLAQRVPLG ETRETAHPRDAHDSRLMASPAPVAQPMPGRVVPPSVTHPSPFGRAQRVPSPGIPALTSYSLLRR LAIRPKTQFTPSTPRAQRARWLSGLTPQSCPEEPALPWEQIAVRLFDQDSGVRLQEQPGRLAVT SPGSHPYGALNFQELKMQRISILQQLLRQEVEGLAVGKYAPLTGGCSLDMVELQPLLADISRTL NAPEQNPGTSHLPGLPQHSEQPEPCPPEDCRETQPCSGAMQPEREVTQPYPPTEPGPPESCCRA RPETAEPSSQEQPEEAKPCPPAEPAPLQPRPQGQSASQEACARVGLGASDACYLEPECLESSPW SCCSQGAPATTDLTFSSQRPLCASPPICSLQSPRPPIGQAGPGSLAPRTMALRQRLKACLTAIH CSHEARLDDECAFYTSRVPPPGPTRVCTNPVATVLEWQDALGFIPVVSAAPQSSPS hide sequence

RefSeq Acc Id:	XP_005406754 ⟸ XM_005406697
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2US64 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRAVGAAMTTIQDSKDPLLRGVSPTPSKIPVRSQRRPPFLAVKPSAEDQENQDPGSLVQKPQLS TQRTLVDSAGPRSKATHQTEKSQKSMAITQLRNPLEELRPSPGGQNAGLGPPPQTEAPGPIEFV ADPAALATILSGEGVKSCPMGRQSSLAQRVLIRGSQGGAIRRGQNARASAYLASRTPIHQPGPA RASCFSRLEGSGPRGRTLCPERLQALVPPSGPSFHPSTRPSLQELRRETGGSIRTASVSQVSGL LLQTPVQPASLPEEHESVPHSDEEGGTLLGLAQRVPLGETRETAHPRDAHDSRLMASPAPVAQP MPGRVVPPSVTHPSPFGRAQRVPSPGIPALTSYSLLRRLAIRPKTQFTPSTPRAQRARWLSGLT PQSCPEEPALPWEQIAVRLFDQDSGVRLQEQPGRLAVTSPGSHPYGALNFQELKMQRISILQQL LRQEVEGLAVGKYAPLTGGCSLDMVELQPLLADISRTLNAPEQNPGTSHLPGLPQHSEQPEPCP PEDCRETQPCSGAMQPEREVTQPYPPTEPGPPESCCRARPETAEPSSQEQPEEAKPCPPAEPAP LQPRPQGQSASQEACARVGLGASDACYLEPECLESSPWSCCSQGAPATTDLTFSSQRPLCASPP ICSLQSPRPPIGQAGPGSLAPRTMALRQRLKACLTAIHCSHEARLDDECAFYTSRVPPPGPTRV CTNPVATVLEWQDALGFIPVVSAAPQSSPS hide sequence

RefSeq Acc Id:	XP_005406755 ⟸ XM_005406698
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2UV82 (UniProtKB/TrEMBL), A0A8C2US64 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTIQDSKDPLLRGVSPTPSKIPVRSQRRPPFLAVKPSAEDQENQDPGSLVQKPQLSTQRTLVD SAGPRSKATHQTEKSQKSMAITQLRNPLEELRPSPGGQNAGLGPPPQTEAPGPIEFVADPAALA TILSGEGVKSCPMGRQSSLAQRVLIRGSQGGAIRRGQNARASAYLASRTPIHQPGPARASCFSR LEGSGPRGRTLCPERLQALVPPSGPSFHPSTRPSLQELRRETGGSIRTASVSQVSGLLLQTPVQ PASLPEEHESVPHSDEEGGTLLGLAQRVPLGETRETAHPRDAHDSRLMASPAPVAQPMPGRVVP PSVTHPSPFGRAQRVPSPGIPALTSYSLLRRLAIRPKTQFTPSTPRAQRARWLSGLTPQSCPEE PALPWEQIAVRLFDQDSGVRLQEQPGRLAVTSPGSHPYGALNFQELKMQRISILQQLLRQEVEG LAVGKYAPLTGGCSLDMVELQPLLADISRTLNAPEQNPGTSHLPGLPQHSEQPEPCPPEDCRET QPCSGAMQPEREVTQPYPPTEPGPPESCCRARPETAEPSSQEQPEEAKPCPPAEPAPLQPRPQG QSASQEACARVGLGASDACYLEPECLESSPWSCCSQGAPATTDLTFSSQRPLCASPPICSLQSP RPPIGQAGPGSLAPRTMALRQRLKACLTAIHCSHEARLDDECAFYTSRVPPPGPTRVCTNPVAT VLEWQDALGFIPVVSAAPQSSPS hide sequence

RefSeq Acc Id:	XP_005406756 ⟸ XM_005406699
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2UV82 (UniProtKB/TrEMBL), A0A8C2US64 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTIQDSKDPLLRGVSPTPSKIPVRSQRRPPFLAVKPSAEDQENQDPGSLVQKPQLSTQRTLVD SAGPRSKATHQTEKSQKSMAITQLRNPLEELRPSPGGQNAGLGPPPQTEAPGPIEFVADPAALA TILSGEGVKSCPMGRQSSLAQRVLIRGSQGGAIRRGQNARASAYLASRTPIHQPGPARASCFSR LEGSGPRGRTLCPERLQALVPPSGPSFHPSTRPSLQELRRETGGSIRTASVSQVSGLLLQTPVQ PASLPEEHESVPHSDEEGGTLLGLAQRVPLGETRETAHPRDAHDSRLMASPAPVAQPMPGRVVP PSVTHPSPFGRAQRVPSPGIPALTSYSLLRRLAIRPKTQFTPSTPRAQRARWLSGLTPQSCPEE PALPWEQIAVRLFDQDSGVRLQEQPGRLAVTSPGSHPYGALNFQELKMQRISILQQLLRQEVEG LAVGKYAPLTGGCSLDMVELQPLLADISRTLNAPEQNPGTSHLPGLPQHSEQPEPCPPEDCRET QPCSGAMQPEREVTQPYPPTEPGPPESCCRARPETAEPSSQEQPEEAKPCPPAEPAPLQPRPQG QSASQEACARVGLGASDACYLEPECLESSPWSCCSQGAPATTDLTFSSQRPLCASPPICSLQSP RPPIGQAGPGSLAPRTMALRQRLKACLTAIHCSHEARLDDECAFYTSRVPPPGPTRVCTNPVAT VLEWQDALGFIPVVSAAPQSSPS hide sequence

RefSeq Acc Id:

ENSCLAP00000004766 ⟸ ENSCLAT00000004855

RefSeq Acc Id:

ENSCLAP00000004767 ⟸ ENSCLAT00000004856

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000003387	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000004855.1	UniProtKB/TrEMBL
	ENSCLAT00000004856	ENTREZGENE
	ENSCLAT00000004856.1	UniProtKB/TrEMBL
InterPro	Tastin	UniProtKB/TrEMBL
NCBI Gene	Troap	ENTREZGENE
PANTHER	PTHR15289	UniProtKB/TrEMBL
	TASTIN	UniProtKB/TrEMBL
UniProt	A0A8C2US64	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2UV82	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD