Pitpnm1 (phosphatidylinositol transfer protein membrane associated 1) - Rat Genome Database

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Gene: Pitpnm1 (phosphatidylinositol transfer protein membrane associated 1) Chinchilla lanigera
Analyze
Symbol: Pitpnm1
Name: phosphatidylinositol transfer protein membrane associated 1
RGD ID: 8804250
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); phosphatidic acid binding (ortholog); phosphatidylcholine binding (ortholog); INVOLVED IN phospholipid transport (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cell body (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: membrane-associated phosphatidylinositol transfer protein 1; phosphatidylinositol transfer protein, membrane-associated 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542217,985,698 - 17,997,204 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pitpnm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542217,985,698 - 17,997,204 (+)NCBIChiLan1.0ChiLan1.0
PITPNM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381167,491,768 - 67,506,266 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1167,491,768 - 67,506,263 (-)EnsemblGRCh38hg38GRCh38
GRCh371167,259,239 - 67,272,834 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361167,015,815 - 67,028,416 (-)NCBINCBI36Build 36hg18NCBI36
Build 341167,015,815 - 67,028,416NCBI
Celera1164,592,975 - 64,607,245 (-)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1163,588,218 - 63,602,052 (-)NCBIHuRef
CHM1_11167,142,283 - 67,155,897 (-)NCBICHM1_1
T2T-CHM13v2.01167,485,895 - 67,500,943 (-)NCBIT2T-CHM13v2.0
Pitpnm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,150,012 - 4,163,966 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl194,149,998 - 4,163,965 (+)EnsemblGRCm39 Ensembl
GRCm38194,099,998 - 4,113,966 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,099,998 - 4,113,965 (+)EnsemblGRCm38mm10GRCm38
MGSCv37194,100,117 - 4,113,965 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,100,622 - 4,113,961 (+)NCBIMGSCv36mm8
Celera193,971,019 - 3,984,867 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.81NCBI
Pitpnm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,823,568 - 210,836,989 (+)NCBIGRCr8
mRatBN7.21201,394,099 - 201,407,523 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1201,394,149 - 201,407,522 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1209,746,396 - 209,759,769 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01216,839,627 - 216,853,000 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01209,530,640 - 209,544,013 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,348,672 - 219,362,094 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,348,721 - 219,362,094 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,219,322 - 226,232,745 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41206,684,110 - 206,697,483 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11206,837,562 - 206,850,936 (+)NCBI
Celera1198,938,672 - 198,952,046 (+)NCBICelera
Cytogenetic Map1q43NCBI
PITPNM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2968,718,846 - 68,733,845 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11169,760,918 - 69,776,417 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01162,850,323 - 62,864,421 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11166,161,559 - 66,176,677 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1166,161,828 - 66,174,677 (-)Ensemblpanpan1.1panPan2
PITPNM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11849,972,970 - 49,985,995 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1849,974,093 - 49,985,909 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1848,583,499 - 48,596,532 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01850,895,386 - 50,908,431 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1850,892,068 - 50,908,430 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11850,108,692 - 50,121,768 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01849,683,223 - 49,696,286 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01850,477,463 - 50,490,539 (+)NCBIUU_Cfam_GSD_1.0
Pitpnm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,819,857 - 5,831,584 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365992,262,204 - 2,276,203 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365992,262,210 - 2,273,933 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PITPNM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,028,935 - 5,044,295 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,028,889 - 5,042,302 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.223,747,399 - 3,760,857 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PITPNM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.116,760,208 - 6,774,006 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl16,761,369 - 6,775,983 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038104,038,031 - 104,057,520 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pitpnm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476719,031,625 - 19,045,166 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476719,031,689 - 19,045,062 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005384318   ⟹   XP_005384375
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,985,698 - 17,997,204 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005384319   ⟹   XP_005384376
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,985,698 - 17,997,204 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005384320   ⟹   XP_005384377
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,985,698 - 17,997,204 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005384375 (Get FASTA)   NCBI Sequence Viewer  
  XP_005384376 (Get FASTA)   NCBI Sequence Viewer  
  XP_005384377 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000021914.1
Reference Protein Sequences
RefSeq Acc Id: XP_005384376   ⟸   XM_005384319
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005384375   ⟸   XM_005384318
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005384377   ⟸   XM_005384320
- Peptide Label: isoform X3
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015015 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022118.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.530.20 UniProtKB/TrEMBL
InterPro PI_transfer UniProtKB/TrEMBL
  START-like_dom_sf UniProtKB/TrEMBL
NCBI Gene Pitpnm1 ENTREZGENE
PANTHER MEMBRANE-ASSOCIATED PHOSPHATIDYLINOSITOL TRANSFER PROTEIN 1 UniProtKB/TrEMBL
  PTHR10658 UniProtKB/TrEMBL
Pfam IP_trans UniProtKB/TrEMBL
PRINTS PITRANSFER UniProtKB/TrEMBL
Superfamily-SCOP Bet v1-like UniProtKB/TrEMBL
UniProt A0A8C2VX32_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Pitpnm1  phosphatidylinositol transfer protein membrane associated 1    phosphatidylinositol transfer protein, membrane-associated 1  Symbol and/or name change 5135510 APPROVED