Ogn (osteoglycin) - Rat Genome Database

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Gene: Ogn (osteoglycin) Chinchilla lanigera
Analyze
Symbol: Ogn
Name: osteoglycin
RGD ID: 8803902
Description: INVOLVED IN negative regulation of smooth muscle cell proliferation (ortholog); ASSOCIATED WITH genetic disease (ortholog); hereditary sensory and autonomic neuropathy type 1 (ortholog); hereditary sensory neuropathy (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mimecan
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555155,372,034 - 5,389,954 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555155,372,225 - 5,389,954 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ogn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555155,372,034 - 5,389,954 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555155,372,225 - 5,389,954 (+)NCBIChiLan1.0ChiLan1.0
OGN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38992,383,268 - 92,404,699 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl992,383,268 - 92,404,696 (-)EnsemblGRCh38hg38GRCh38
GRCh37995,145,550 - 95,166,981 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36994,186,070 - 94,206,758 (-)NCBINCBI36Build 36hg18NCBI36
Celera965,588,282 - 65,608,970 (-)NCBICelera
Cytogenetic Map9q22.31NCBI
HuRef964,823,710 - 64,844,399 (-)NCBIHuRef
CHM1_1995,292,689 - 95,313,376 (-)NCBICHM1_1
T2T-CHM13v2.09104,549,769 - 104,571,196 (-)NCBIT2T-CHM13v2.0
Ogn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391349,761,491 - 49,777,977 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1349,761,522 - 49,777,977 (+)EnsemblGRCm39 Ensembl
GRCm381349,608,015 - 49,624,501 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1349,608,046 - 49,624,501 (+)EnsemblGRCm38mm10GRCm38
MGSCv371349,703,440 - 49,719,869 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361349,620,008 - 49,636,437 (+)NCBIMGSCv36mm8
Celera1350,698,836 - 50,715,265 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1325.34NCBI
Ogn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81715,238,500 - 15,259,167 (-)NCBIGRCr8
mRatBN7.21715,032,069 - 15,052,626 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1715,032,069 - 15,052,739 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1714,919,266 - 14,939,703 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01716,524,322 - 16,544,765 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01714,846,060 - 14,866,498 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01714,607,442 - 14,628,274 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1715,447,716 - 15,467,359 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1714,607,442 - 14,627,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01717,506,166 - 17,527,131 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41720,987,029 - 21,007,525 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11720,987,030 - 21,007,504 (-)NCBI
Celera1714,763,600 - 14,783,780 (-)NCBICelera
Cytogenetic Map17p14NCBI
OGN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21147,023,831 - 47,045,720 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1947,026,287 - 47,048,803 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0963,505,165 - 63,527,761 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1991,578,833 - 91,600,741 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl991,578,833 - 91,600,738 (-)Ensemblpanpan1.1panPan2
OGN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,939,374 - 98,959,173 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,939,429 - 98,957,543 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,333,213 - 99,353,015 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0199,556,194 - 99,575,993 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl199,555,768 - 99,627,336 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1199,169,271 - 99,189,070 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0198,904,553 - 98,924,354 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0199,661,321 - 99,681,130 (+)NCBIUU_Cfam_GSD_1.0
Ogn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049447,813,284 - 7,827,902 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364872,028,948 - 2,044,387 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364872,029,755 - 2,043,242 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OGN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl342,116,526 - 42,135,939 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1342,116,521 - 42,135,940 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2343,250,528 - 43,259,180 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OGN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112102,908,482 - 102,928,956 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12102,908,479 - 102,928,827 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603891,180,673 - 91,201,156 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ogn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248683,950,154 - 3,971,674 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248683,950,145 - 3,974,359 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000001680   ⟹   ENSCLAP00000001637
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555155,372,034 - 5,389,954 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000001681   ⟹   ENSCLAP00000001638
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555155,372,034 - 5,389,288 (+)Ensembl
RefSeq Acc Id: XM_005408903   ⟹   XP_005408960
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555155,372,225 - 5,389,954 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005408960 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001637
  ENSCLAP00000001637.1
  ENSCLAP00000001638.1
Reference Protein Sequences
RefSeq Acc Id: XP_005408960   ⟸   XM_005408903
- UniProtKB: A0A8C2UNX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000001637   ⟸   ENSCLAT00000001680
RefSeq Acc Id: ENSCLAP00000001638   ⟸   ENSCLAT00000001681


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001225 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001680 ENTREZGENE
  ENSCLAT00000001680.1 UniProtKB/TrEMBL
  ENSCLAT00000001681.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  Mimecan/Epiphycan UniProtKB/TrEMBL
NCBI Gene Ogn ENTREZGENE
PANTHER PTHR46269 UniProtKB/TrEMBL
  PTHR46269:SF1 UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A8C2UNX3 ENTREZGENE, UniProtKB/TrEMBL