Ostm1 (osteoclastogenesis associated transmembrane protein 1) - Rat Genome Database

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Gene: Ostm1 (osteoclastogenesis associated transmembrane protein 1) Chinchilla lanigera
Analyze
Symbol: Ostm1
Name: osteoclastogenesis associated transmembrane protein 1
RGD ID: 8803571
Description: INVOLVED IN osteoclast differentiation (ortholog); transepithelial chloride transport (ortholog); ASSOCIATED WITH autosomal recessive osteopetrosis 5 (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); genetic disease (ortholog); FOUND IN chloride channel complex (ortholog); cytosol (ortholog); lysosomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: osteopetrosis associated transmembrane protein 1; osteopetrosis-associated transmembrane protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541133,171,264 - 33,205,486 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541133,168,868 - 33,205,452 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ostm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541133,171,264 - 33,205,486 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541133,168,868 - 33,205,452 (-)NCBIChiLan1.0ChiLan1.0
OSTM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386108,041,409 - 108,074,741 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6108,029,245 - 108,165,854 (-)EnsemblGRCh38hg38GRCh38
GRCh376108,362,613 - 108,395,945 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366108,469,306 - 108,502,634 (-)NCBINCBI36Build 36hg18NCBI36
Build 346108,469,305 - 108,502,634NCBI
Celera6109,109,095 - 109,142,438 (-)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6105,930,856 - 105,964,198 (-)NCBIHuRef
CHM1_16108,625,219 - 108,658,570 (-)NCBICHM1_1
T2T-CHM13v2.06109,218,461 - 109,251,819 (-)NCBIT2T-CHM13v2.0
Ostm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391042,554,912 - 42,578,458 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1042,459,818 - 42,578,455 (+)EnsemblGRCm39 Ensembl
GRCm381042,678,916 - 42,702,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1042,583,822 - 42,702,459 (+)EnsemblGRCm38mm10GRCm38
MGSCv371042,398,723 - 42,422,261 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361042,367,332 - 42,390,870 (+)NCBIMGSCv36mm8
Celera1043,546,113 - 43,569,890 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1022.89NCBI
Ostm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82047,653,696 - 47,769,248 (+)NCBIGRCr8
mRatBN7.22046,071,657 - 46,187,049 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2046,153,075 - 46,187,023 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2047,870,532 - 47,904,458 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02047,520,687 - 47,554,613 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02048,212,885 - 48,246,518 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02047,394,979 - 47,430,304 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2047,395,014 - 47,430,284 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02049,062,739 - 49,092,292 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2053,793,629 - 53,820,512 (-)NCBICelera
Cytogenetic Map20q13NCBI
OSTM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25128,047,882 - 128,080,071 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16125,938,015 - 125,970,220 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06105,842,261 - 105,874,429 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16109,705,522 - 109,738,691 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6109,705,519 - 109,738,691 (-)Ensemblpanpan1.1panPan2
OSTM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11265,085,456 - 65,120,827 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1265,087,243 - 65,120,832 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1264,901,693 - 64,936,804 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01265,961,124 - 65,996,247 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1265,961,124 - 65,996,266 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11265,317,035 - 65,352,393 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01265,162,813 - 65,198,133 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01265,436,313 - 65,471,416 (-)NCBIUU_Cfam_GSD_1.0
Ostm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946100,026,706 - 100,057,222 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365644,301,569 - 4,332,070 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OSTM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl174,139,330 - 74,181,084 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1174,139,326 - 74,181,165 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2183,410,028 - 83,451,815 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OSTM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11365,774,825 - 65,812,606 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1365,774,844 - 65,809,272 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604038,103,051 - 38,151,291 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ostm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478014,212,762 - 14,247,994 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478014,212,803 - 14,247,818 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000021573   ⟹   ENSCLAP00000021370
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541133,171,264 - 33,205,486 (-)Ensembl
RefSeq Acc Id: XM_005377842   ⟹   XP_005377899
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541133,168,868 - 33,205,452 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005377899 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000021370
  ENSCLAP00000021370.1
Reference Protein Sequences
RefSeq Acc Id: XP_005377899   ⟸   XM_005377842
- UniProtKB: A0A8C2W093 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000021370   ⟸   ENSCLAT00000021573


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014636 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021573 ENTREZGENE
  ENSCLAT00000021573.1 UniProtKB/TrEMBL
InterPro Osteopetrosis-assoc_TM_1 UniProtKB/TrEMBL
NCBI Gene Ostm1 ENTREZGENE
PANTHER OSTEOPETROSIS-ASSOCIATED TRANSMEMBRANE PROTEIN 1 UniProtKB/TrEMBL
  PTHR15644 UniProtKB/TrEMBL
Pfam OSTMP1 UniProtKB/TrEMBL
UniProt A0A8C2W093 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-08-14 Ostm1  osteoclastogenesis associated transmembrane protein 1    osteopetrosis associated transmembrane protein 1  Symbol and/or name change 5135510 APPROVED