Ccna2 (cyclin A2) - Rat Genome Database

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Gene: Ccna2 (cyclin A2) Chinchilla lanigera
Analyze
Symbol: Ccna2
Name: cyclin A2
RGD ID: 8802225
Description: ENCODES a protein that exhibits cyclin-dependent protein serine/threonine kinase regulator activity (ortholog); protein domain specific binding (ortholog); protein kinase binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); cell cycle G1/S phase transition (ortholog); cellular response to cocaine (ortholog); PARTICIPATES IN G1/S transition pathway; p53 signaling pathway; ASSOCIATED WITH Carotid Artery Injuries (ortholog); congestive heart failure (ortholog); COVID-19 (ortholog); FOUND IN cyclin A2-CDK1 complex (ortholog); cyclin A2-CDK2 complex (ortholog); cyclin-dependent protein kinase holoenzyme complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-A2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542818,726,062 - 18,732,211 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542818,725,969 - 18,732,478 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ccna2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542818,726,062 - 18,732,211 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542818,725,969 - 18,732,478 (+)NCBIChiLan1.0ChiLan1.0
CCNA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384121,816,444 - 121,823,883 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4121,816,444 - 121,823,883 (-)EnsemblGRCh38hg38GRCh38
GRCh374122,737,599 - 122,745,038 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364122,957,975 - 122,964,342 (-)NCBINCBI36Build 36hg18NCBI36
Build 344123,096,129 - 123,102,485NCBI
Celera4120,123,415 - 120,130,904 (-)NCBICelera
Cytogenetic Map4q27NCBI
HuRef4118,464,283 - 118,471,772 (-)NCBIHuRef
CHM1_14122,714,067 - 122,721,556 (-)NCBICHM1_1
T2T-CHM13v2.04125,120,496 - 125,127,935 (-)NCBIT2T-CHM13v2.0
Ccna2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39336,619,014 - 36,627,187 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl336,619,014 - 36,626,299 (-)EnsemblGRCm39 Ensembl
GRCm38336,564,865 - 36,573,038 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl336,564,865 - 36,572,150 (-)EnsemblGRCm38mm10GRCm38
MGSCv37336,463,787 - 36,470,918 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36336,756,414 - 36,763,490 (-)NCBIMGSCv36mm8
Celera336,449,044 - 36,457,213 (-)NCBICelera
Cytogenetic Map3BNCBI
cM Map317.67NCBI
Ccna2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82121,355,363 - 121,361,762 (-)NCBIGRCr8
mRatBN7.22119,427,239 - 119,433,645 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2119,426,089 - 119,433,577 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2125,981,869 - 125,988,202 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02124,094,364 - 124,100,697 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02118,723,360 - 118,729,693 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02123,274,727 - 123,282,266 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2123,275,881 - 123,282,214 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02142,890,984 - 142,897,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42123,062,752 - 123,069,085 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12123,009,712 - 123,013,946 (-)NCBI
Celera2114,385,123 - 114,391,456 (-)NCBICelera
Cytogenetic Map2q25NCBI
CCNA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23119,612,574 - 119,620,418 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14119,881,687 - 119,889,283 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04114,016,917 - 114,024,816 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14125,153,810 - 125,161,370 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4125,153,810 - 125,161,302 (-)Ensemblpanpan1.1panPan2
CCNA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11918,317,866 - 18,324,592 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1918,318,004 - 18,323,691 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1918,534,627 - 18,544,698 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01918,436,112 - 18,446,091 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1918,436,169 - 18,442,776 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11918,387,227 - 18,397,254 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01918,668,909 - 18,678,936 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01919,144,640 - 19,154,711 (+)NCBIUU_Cfam_GSD_1.0
Ccna2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530166,040,643 - 66,046,184 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366621,073,920 - 1,079,136 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366621,073,460 - 1,079,136 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8102,260,215 - 102,266,309 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18102,260,346 - 102,266,274 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28109,455,845 - 109,461,772 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCNA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1769,092,410 - 69,100,191 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl769,093,543 - 69,099,497 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603748,053,566 - 48,060,924 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccna2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247772,097,002 - 2,104,244 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000005565   ⟹   ENSCLAP00000005466
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542818,726,062 - 18,732,211 (+)Ensembl
RefSeq Acc Id: XM_005386783   ⟹   XP_005386840
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542818,725,969 - 18,732,478 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005386840 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000005466
  ENSCLAP00000005466.1
RefSeq Acc Id: XP_005386840   ⟸   XM_005386783
- UniProtKB: A0A8C2UY85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000005466   ⟸   ENSCLAT00000005565
Protein Domains
Cyclin C-terminal   Cyclin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003880 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005565 ENTREZGENE
  ENSCLAT00000005565.1 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
InterPro Cyclin UniProtKB/TrEMBL
  Cyclin-A_N UniProtKB/TrEMBL
  Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_A/B-like UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
  Cyclins_cyclin-box UniProtKB/TrEMBL
NCBI Gene Ccna2 ENTREZGENE
PANTHER CYCLIN-A2 UniProtKB/TrEMBL
  PTHR10177 UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
  Cyclin_N2 UniProtKB/TrEMBL
PIRSF Cyclin_A_B_D_E UniProtKB/TrEMBL
PROSITE CYCLINS UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt A0A8C2UY85 ENTREZGENE, UniProtKB/TrEMBL