Mtmr1 (myotubularin related protein 1) - Rat Genome Database

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Gene: Mtmr1 (myotubularin related protein 1) Chinchilla lanigera
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Symbol: Mtmr1
Name: myotubularin related protein 1
RGD ID: 8801006
Description: ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity (ortholog); phosphatidylinositol-3-phosphatase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN phosphatidylinositol dephosphorylation (ortholog); regulation of phosphatidylinositol dephosphorylation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); centronuclear myopathy X-linked (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myotubularin-related protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554986,462,626 - 6,528,380 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554986,462,706 - 6,528,297 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Mtmr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554986,462,626 - 6,528,380 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554986,462,706 - 6,528,297 (+)NCBIChiLan1.0ChiLan1.0
MTMR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X150,692,962 - 150,765,108 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX150,692,971 - 150,765,108 (+)EnsemblGRCh38hg38GRCh38
GRCh37X149,861,435 - 149,933,581 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X149,612,527 - 149,684,233 (+)NCBINCBI36hg18NCBI36
Build 34X149,532,414 - 149,604,136NCBI
CeleraX150,109,440 - 150,181,123 (+)NCBI
Cytogenetic MapXq28NCBI
HuRefX138,746,677 - 138,793,029 (+)NCBIHuRef
CHM1_1X149,736,219 - 149,807,918 (+)NCBICHM1_1
T2T-CHM13v2.0X148,960,611 - 149,032,751 (+)NCBI
Mtmr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X70,408,332 - 70,462,802 (+)NCBIGRCm39mm39
GRCm39 EnsemblX70,408,366 - 70,462,802 (+)Ensembl
GRCm38X71,364,760 - 71,419,196 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX71,364,760 - 71,419,196 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X68,617,935 - 68,672,371 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X67,625,316 - 67,679,752 (+)NCBImm8
CeleraX62,344,835 - 62,399,305 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
Mtmr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.218215,031 - 248,541 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl18215,089 - 248,541 (+)Ensembl
Rnor_6.018291,785 - 325,415 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl18291,780 - 325,377 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.018337,401 - 371,027 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.418205,546 - 238,997 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.118205,641 - 237,603 (+)NCBI
Celera18210,086 - 243,538 (+)NCBICelera
Cytogenetic Map18p13NCBI
MTMR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X150,281,374 - 150,346,900 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX150,279,183 - 150,346,900 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X140,343,740 - 140,415,134 (+)NCBIMhudiblu_PPA_v0panPan3
MTMR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X118,936,865 - 118,999,630 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX118,937,470 - 118,999,920 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX104,316,768 - 104,380,906 (+)NCBI
ROS_Cfam_1.0X121,155,483 - 121,219,628 (+)NCBI
ROS_Cfam_1.0 EnsemblX121,155,477 - 121,230,341 (+)Ensembl
UMICH_Zoey_3.1X117,881,398 - 117,945,410 (+)NCBI
UNSW_CanFamBas_1.0X120,359,465 - 120,423,334 (+)NCBI
UU_Cfam_GSD_1.0X120,241,922 - 120,305,948 (+)NCBI
Mtmr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X116,483,467 - 116,562,518 (+)NCBI
SpeTri2.0NW_0049367141,693,919 - 1,772,974 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTMR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX122,394,921 - 122,453,905 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X122,394,768 - 122,455,266 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X140,009,688 - 140,070,233 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MTMR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X125,276,674 - 125,354,065 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 EnsemblX125,281,758 - 125,354,377 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606562,977,776 - 63,031,062 (+)NCBIVero_WHO_p1.0
Mtmr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249231,072,957 - 1,143,182 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046249231,073,009 - 1,143,183 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000000740   ⟹   ENSCLAP00000000705
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554986,462,626 - 6,528,380 (+)Ensembl
RefSeq Acc Id: XM_005406421   ⟹   XP_005406478
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554986,462,706 - 6,528,297 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005406423   ⟹   XP_005406480
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554986,462,706 - 6,528,297 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005406424   ⟹   XP_005406481
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554986,462,706 - 6,528,297 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005406425   ⟹   XP_005406482
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554986,462,706 - 6,528,297 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005406426   ⟹   XP_005406483
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554986,462,706 - 6,528,297 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013505542   ⟹   XP_013360996
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554986,462,706 - 6,528,297 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005406478   ⟸   XM_005406421
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005406480   ⟸   XM_005406423
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005406481   ⟸   XM_005406424
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005406482   ⟸   XM_005406425
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005406483   ⟸   XM_005406426
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013360996   ⟸   XM_013505542
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000000705   ⟸   ENSCLAT00000000740

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000560 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000000705 ENTREZGENE
  ENSCLAP00000000705.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000740 ENTREZGENE
  ENSCLAT00000000740.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro GRAM UniProtKB/TrEMBL
  MTMR1 UniProtKB/TrEMBL
  MTMR1_PH-GRAM UniProtKB/TrEMBL
  Myotubularin-like_Pase_dom UniProtKB/TrEMBL
  Myotubularin_fam UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  Tyr_Pase_dom UniProtKB/TrEMBL
NCBI Gene Mtmr1 ENTREZGENE
PANTHER PTHR10807 UniProtKB/TrEMBL
  PTHR10807:SF40 UniProtKB/TrEMBL
Pfam GRAM UniProtKB/TrEMBL
  Myotub-related UniProtKB/TrEMBL
PROSITE PPASE_MYOTUBULARIN UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
SMART GRAM UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/TrEMBL
UniProt A0A8C2YIA3_CHILA UniProtKB/TrEMBL