Acap1 (ArfGAP with coiled-coil, ankyrin repeat and PH domains 1) - Rat Genome Database

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Gene: Acap1 (ArfGAP with coiled-coil, ankyrin repeat and PH domains 1) Chinchilla lanigera
Analyze
Symbol: Acap1
Name: ArfGAP with coiled-coil, ankyrin repeat and PH domains 1
RGD ID: 8799998
Description: ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,563,933 - 9,583,273 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,568,455 - 9,583,279 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Acap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,563,933 - 9,583,273 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,568,455 - 9,583,279 (-)NCBIChiLan1.0ChiLan1.0
ACAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,336,529 - 7,351,477 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,336,529 - 7,351,477 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,239,848 - 7,254,796 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,180,597 - 7,195,517 (+)NCBINCBI36Build 36hg18NCBI36
Build 34177,180,596 - 7,195,518NCBI
Celera177,265,787 - 7,280,732 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,133,900 - 7,148,846 (+)NCBIHuRef
CHM1_1177,248,614 - 7,263,568 (+)NCBICHM1_1
T2T-CHM13v2.0177,240,514 - 7,255,462 (+)NCBIT2T-CHM13v2.0
Acap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,772,393 - 69,786,390 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,772,393 - 69,786,365 (-)EnsemblGRCm39 Ensembl
GRCm381169,881,566 - 69,895,568 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,881,567 - 69,895,539 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,695,069 - 69,709,041 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,697,762 - 69,711,734 (-)NCBIMGSCv36mm8
MGSCv361170,465,085 - 70,479,314 (-)NCBIMGSCv36mm8
Celera1177,429,122 - 77,443,570 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.91NCBI
Acap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,104,040 - 55,119,280 (-)NCBIGRCr8
mRatBN7.21054,605,323 - 54,619,472 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,605,323 - 54,619,472 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,267,804 - 59,281,700 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,756,375 - 58,770,272 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,264,041 - 54,277,947 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,492,300 - 56,506,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,492,300 - 56,506,446 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,237,419 - 56,251,565 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,725,173 - 56,727,956 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,739,135 - 56,753,290 (-)NCBI
Celera1053,759,331 - 53,773,460 (-)NCBICelera
Cytogenetic Map10q24NCBI
ACAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,926,225 - 14,948,514 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,892,121 - 16,914,350 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,370,732 - 7,385,730 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,356,887 - 7,371,844 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,356,893 - 7,371,844 (+)Ensemblpanpan1.1panPan2
ACAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,291,804 - 32,305,236 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,292,163 - 32,305,234 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,429,841 - 32,443,451 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,397,200 - 32,410,802 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,393,473 - 32,410,489 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,362,625 - 32,376,257 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,321,395 - 32,335,005 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,498,439 - 32,512,044 (+)NCBIUU_Cfam_GSD_1.0
Acap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,154,654 - 47,169,863 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595629,394 - 644,051 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595629,417 - 644,051 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,685,045 - 52,697,459 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,683,230 - 52,698,746 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,907,399 - 54,916,270 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,715,240 - 6,729,781 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,715,278 - 6,729,864 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,681,255 - 14,695,791 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247869,958,351 - 9,972,326 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247869,955,883 - 9,972,391 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017411   ⟹   ENSCLAP00000017242
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554679,563,933 - 9,583,273 (-)Ensembl
RefSeq Acc Id: XM_005399511   ⟹   XP_005399568
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,568,455 - 9,582,774 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522119   ⟹   XP_013377573
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,568,455 - 9,583,273 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001236859
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,568,622 - 9,583,279 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005399568 (Get FASTA)   NCBI Sequence Viewer  
  XP_013377573 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017242
  ENSCLAP00000017242.1
Reference Protein Sequences
RefSeq Acc Id: XP_005399568   ⟸   XM_005399511
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013377573   ⟸   XM_013522119
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VSY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000017242   ⟸   ENSCLAT00000017411
Protein Domains
Arf-GAP   PH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011835 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017411 ENTREZGENE
  ENSCLAT00000017411.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.220.150 UniProtKB/TrEMBL
  1.20.1270.60 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro ACAP1/2/3-like UniProtKB/TrEMBL
  AH/BAR_dom_sf UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  ARFGAP/RecO UniProtKB/TrEMBL
  ArfGAP_dom UniProtKB/TrEMBL
  ArfGAP_dom_sf UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
NCBI Gene Acap1 ENTREZGENE
PANTHER ARF-GAP WITH COILED-COIL, ANK REPEAT AND PH DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR23180 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  ArfGap UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
PRINTS REVINTRACTNG UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  ARFGAP UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  ArfGap UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF103657 UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
  SSF57863 UniProtKB/TrEMBL
UniProt A0A8C2VSY4 ENTREZGENE, UniProtKB/TrEMBL