Inpp5f (inositol polyphosphate-5-phosphatase F) - Rat Genome Database

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Gene: Inpp5f (inositol polyphosphate-5-phosphatase F) Chinchilla lanigera
Analyze
Symbol: Inpp5f
Name: inositol polyphosphate-5-phosphatase F
RGD ID: 8798418
Description: ENCODES a protein that exhibits inositol monophosphate 4-phosphatase activity (ortholog); phosphatidylinositol phosphate 4-phosphatase activity (ortholog); phosphatidylinositol phosphate 5-phosphatase activity (ortholog); INVOLVED IN adult locomotory behavior (ortholog); cardiac muscle hypertrophy in response to stress (ortholog); clathrin-dependent endocytosis (ortholog); FOUND IN axon (ortholog); clathrin-coated endocytic vesicle (ortholog); clathrin-coated pit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphatidylinositide phosphatase SAC2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955551570,304 - 640,243 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955551634,724 - 641,266 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Inpp5f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955551570,304 - 640,243 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955551634,724 - 641,266 (+)NCBIChiLan1.0ChiLan1.0
INPP5F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810119,726,050 - 119,829,147 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl10119,726,042 - 119,829,147 (+)EnsemblGRCh38hg38GRCh38
GRCh3710121,485,562 - 121,588,659 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610121,475,599 - 121,578,649 (+)NCBINCBI36hg18NCBI36
Celera10115,216,680 - 115,319,730 (+)NCBI
Cytogenetic Map10q26.11NCBI
HuRef10115,115,057 - 115,217,590 (+)NCBIHuRef
CHM1_110121,770,489 - 121,873,582 (+)NCBICHM1_1
T2T-CHM13v2.010120,623,626 - 120,726,730 (+)NCBI
Inpp5f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397128,212,905 - 128,298,161 (+)NCBIGRCm39mm39
GRCm39 Ensembl7128,213,052 - 128,298,149 (+)Ensembl
GRCm387128,611,181 - 128,696,436 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7128,611,328 - 128,696,425 (+)EnsemblGRCm38mm10GRCm38
MGSCv377135,754,879 - 135,839,950 (+)NCBIGRCm37mm9NCBIm37
MGSCv367128,402,513 - 128,487,584 (+)NCBImm8
Celera7128,446,401 - 128,535,180 (+)NCBICelera
Cytogenetic Map7F3NCBI
Inpp5f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21183,190,480 - 183,270,276 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1183,190,480 - 183,270,276 (+)Ensembl
Rnor_6.01200,037,749 - 200,116,524 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1200,037,749 - 200,116,524 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01207,085,305 - 207,164,063 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01207,391,055 - 207,416,144 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,868,447 - 187,948,236 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11188,017,881 - 188,097,016 (+)NCBI
Celera1180,836,730 - 180,916,413 (+)NCBICelera
Cytogenetic Map1q37NCBI
INPP5F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110119,712,696 - 119,813,450 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10119,712,696 - 119,813,444 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v010116,295,802 - 116,396,764 (+)NCBIMhudiblu_PPA_v0panPan3
INPP5F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12829,878,489 - 29,945,598 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2829,858,658 - 29,944,490 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2830,000,260 - 30,087,467 (+)NCBI
ROS_Cfam_1.02830,389,637 - 30,477,263 (+)NCBI
ROS_Cfam_1.0 Ensembl2830,389,318 - 30,477,259 (+)Ensembl
UMICH_Zoey_3.12829,942,569 - 30,029,782 (+)NCBI
UNSW_CanFamBas_1.02829,965,152 - 30,052,567 (+)NCBI
UU_Cfam_GSD_1.02830,157,914 - 30,245,161 (+)NCBI
Inpp5f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721316,376,764 - 16,438,128 (-)NCBI
SpeTri2.0NW_0049364869,123,176 - 9,166,715 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INPP5F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14129,577,567 - 129,669,875 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114129,577,594 - 129,671,541 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214141,103,045 - 141,195,778 (+)NCBISscrofa10.2Sscrofa10.2susScr3
INPP5F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19112,517,524 - 112,621,452 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl9112,517,724 - 112,621,685 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604873,792,784 - 73,897,076 (+)NCBIVero_WHO_p1.0
Inpp5f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473727,000,076 - 27,122,815 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473727,001,090 - 27,123,022 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004068   ⟹   ENSCLAP00000003988
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955551570,304 - 640,243 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000004069   ⟹   ENSCLAP00000003989
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955551634,920 - 640,243 (+)Ensembl
RefSeq Acc Id: XM_005412166   ⟹   XP_005412223
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955551634,724 - 641,266 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005412223 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005412223   ⟸   XM_005412166
- Sequence:
RefSeq Acc Id: ENSCLAP00000003988   ⟸   ENSCLAT00000004068
RefSeq Acc Id: ENSCLAP00000003989   ⟸   ENSCLAT00000004069
Protein Domains
hSac2   SAC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002847 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000003988.1 UniProtKB/TrEMBL
  ENSCLAP00000003989 ENTREZGENE
  ENSCLAP00000003989.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004068.1 UniProtKB/TrEMBL
  ENSCLAT00000004069 ENTREZGENE
  ENSCLAT00000004069.1 UniProtKB/TrEMBL
InterPro hSac2 UniProtKB/TrEMBL
  Inositol_phosphatase UniProtKB/TrEMBL
  SAC_dom UniProtKB/TrEMBL
NCBI Gene Inpp5f ENTREZGENE
Pfam hSac2 UniProtKB/TrEMBL
  Syja_N UniProtKB/TrEMBL
PROSITE HSAC2 UniProtKB/TrEMBL
  SAC UniProtKB/TrEMBL
UniProt A0A8C2US76_CHILA UniProtKB/TrEMBL
  A0A8C2UVN5_CHILA UniProtKB/TrEMBL