Slc19a3 (solute carrier family 19 member 3) - Rat Genome Database

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Gene: Slc19a3 (solute carrier family 19 member 3) Chinchilla lanigera
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Symbol: Slc19a3
Name: solute carrier family 19 member 3
RGD ID: 8798281
Description: ENCODES a protein that exhibits thiamine transmembrane transporter activity (ortholog); INVOLVED IN pyridoxine transport (ortholog); thiamine diphosphate biosynthetic process (ortholog); thiamine transmembrane transport (ortholog); ASSOCIATED WITH basal ganglia disease (ortholog); biotin-responsive basal ganglia disease (ortholog); chronic kidney disease (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 19 (thiamine transporter), member 3; thiamine transporter 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554536,935,371 - 6,958,103 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554536,935,372 - 6,957,808 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc19a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554536,935,371 - 6,958,103 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554536,935,372 - 6,957,808 (+)NCBIChiLan1.0ChiLan1.0
SLC19A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382227,683,763 - 227,718,028 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2227,683,763 - 227,718,028 (-)EnsemblGRCh38hg38GRCh38
GRCh372228,548,479 - 228,582,744 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362228,258,170 - 228,290,989 (-)NCBINCBI36Build 36hg18NCBI36
Build 342228,375,430 - 228,408,231NCBI
Celera2222,319,407 - 222,352,201 (-)NCBICelera
Cytogenetic Map2q36.3NCBI
HuRef2220,392,670 - 220,425,503 (-)NCBIHuRef
CHM1_12228,556,170 - 228,588,989 (-)NCBICHM1_1
T2T-CHM13v2.02228,166,399 - 228,200,658 (-)NCBIT2T-CHM13v2.0
Slc19a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39182,990,242 - 83,016,541 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl182,990,244 - 83,016,169 (-)EnsemblGRCm39 Ensembl
GRCm38183,012,523 - 83,038,820 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl183,012,523 - 83,038,448 (-)EnsemblGRCm38mm10GRCm38
MGSCv37183,009,098 - 83,035,023 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36182,892,821 - 82,917,472 (-)NCBIMGSCv36mm8
Celera183,077,119 - 83,103,116 (-)NCBICelera
Cytogenetic Map1C5NCBI
cM Map142.65NCBI
Slc19a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8991,723,799 - 91,747,499 (-)NCBIGRCr8
mRatBN7.2984,275,722 - 84,299,368 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl984,277,024 - 84,299,337 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx992,707,216 - 92,729,248 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0997,835,678 - 97,857,714 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0996,218,535 - 96,240,515 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0988,762,775 - 88,828,553 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl988,764,073 - 88,816,898 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0988,510,631 - 88,572,788 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4982,323,669 - 82,346,559 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1982,507,109 - 82,532,580 (-)NCBI
Celera981,719,462 - 81,741,701 (-)NCBICelera
Cytogenetic Map9q35NCBI
SLC19A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213130,298,237 - 130,333,141 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B130,313,207 - 130,348,111 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B114,925,990 - 114,957,841 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B233,736,721 - 233,767,935 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B233,736,050 - 233,764,514 (-)Ensemblpanpan1.1panPan2
LOC486151
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12540,411,489 - 40,442,183 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2540,412,427 - 40,438,042 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2541,028,950 - 41,066,567 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02540,657,948 - 40,695,609 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2540,657,948 - 40,675,743 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12540,594,535 - 40,632,168 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02540,436,167 - 40,473,798 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02540,609,381 - 40,647,026 (-)NCBIUU_Cfam_GSD_1.0
LOC101963615
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303182,599,704 - 182,624,242 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365258,322,602 - 8,340,082 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365258,323,550 - 8,339,686 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC19A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15129,071,582 - 129,096,282 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115129,071,563 - 129,096,338 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215142,948,609 - 142,973,510 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Slc19a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248431,900,240 - 1,916,610 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000010789   ⟹   ENSCLAP00000010657
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554536,935,371 - 6,958,103 (+)Ensembl
RefSeq Acc Id: XM_005395442   ⟹   XP_005395499
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554536,935,372 - 6,957,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013519971   ⟹   XP_013375425
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554536,935,372 - 6,957,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013519972   ⟹   XP_013375426
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554536,935,372 - 6,957,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013519973   ⟹   XP_013375427
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554536,935,391 - 6,957,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013519974   ⟹   XP_013375428
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554536,935,372 - 6,957,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013519975   ⟹   XP_013375429
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554536,935,372 - 6,957,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013519976   ⟹   XP_013375430
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554536,935,372 - 6,957,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013519977   ⟹   XP_013375431
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554536,935,372 - 6,957,808 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013519978   ⟹   XP_013375432
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554536,935,372 - 6,957,808 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005395499   ⟸   XM_005395442
- UniProtKB: A0A8C2YN10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375428   ⟸   XM_013519974
- UniProtKB: A0A8C2YN10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375430   ⟸   XM_013519976
- UniProtKB: A0A8C2YN10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375425   ⟸   XM_013519971
- UniProtKB: A0A8C2YN10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375426   ⟸   XM_013519972
- UniProtKB: A0A8C2YN10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375429   ⟸   XM_013519975
- UniProtKB: A0A8C2YN10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375431   ⟸   XM_013519977
- UniProtKB: A0A8C2YN10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375432   ⟸   XM_013519978
- UniProtKB: A0A8C2YN10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375427   ⟸   XM_013519973
- UniProtKB: A0A8C2YN10 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000010657   ⟸   ENSCLAT00000010789


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007352 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010789 ENTREZGENE
  ENSCLAT00000010789.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro Folate_carrier UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
NCBI Gene Slc19a3 ENTREZGENE
PANTHER PTHR10686 UniProtKB/TrEMBL
  THIAMINE TRANSPORTER 2 UniProtKB/TrEMBL
Pfam Folate_carrier UniProtKB/TrEMBL
PIRSF Folate_carrier UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A8C2YN10 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc19a3  solute carrier family 19 member 3    solute carrier family 19 (thiamine transporter), member 3  Symbol and/or name change 5135510 APPROVED