Gart (phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase) - Rat Genome Database

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Gene: Gart (phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase) Chinchilla lanigera
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Symbol: Gart
Name: phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase
RGD ID: 8796425
Description: ENCODES a protein that exhibits phosphoribosylamine-glycine ligase activity (ortholog); phosphoribosylformylglycinamidine cyclo-ligase activity (ortholog); phosphoribosylglycinamide formyltransferase activity (ortholog); INVOLVED IN 'de novo' AMP biosynthetic process (ortholog); 'de novo' IMP biosynthetic process (ortholog); 'de novo' XMP biosynthetic process (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); Animal Disease Models (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: trifunctional purine biosynthetic protein adenosine-3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540732,944,164 - 32,973,863 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540732,944,638 - 32,975,142 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gart
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540732,944,164 - 32,973,863 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540732,944,638 - 32,975,142 (-)NCBIChiLan1.0ChiLan1.0
GART
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382133,503,931 - 33,542,893 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2133,503,931 - 33,543,491 (-)EnsemblGRCh38hg38GRCh38
GRCh372134,876,238 - 34,915,198 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362133,798,139 - 33,836,286 (-)NCBINCBI36Build 36hg18NCBI36
Build 342133,818,186 - 33,836,286NCBI
Celera2120,075,872 - 20,114,832 (-)NCBICelera
Cytogenetic Map21q22.11ENTREZGENE
HuRef2120,354,547 - 20,393,666 (-)NCBIHuRef
CHM1_12134,438,919 - 34,477,881 (-)NCBICHM1_1
T2T-CHM13v2.02131,885,765 - 31,924,746 (-)NCBIT2T-CHM13v2.0
Gart
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391691,418,283 - 91,444,505 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1691,418,074 - 91,443,840 (-)EnsemblGRCm39 Ensembl
GRCm381691,621,395 - 91,646,972 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1691,621,186 - 91,646,952 (-)EnsemblGRCm38mm10GRCm38
MGSCv371691,621,640 - 91,647,217 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361691,510,268 - 91,535,812 (-)NCBIMGSCv36mm8
Celera1692,698,203 - 92,723,705 (-)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1653.18NCBI
Gart
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81144,351,841 - 44,377,086 (-)NCBIGRCr8
mRatBN7.21130,864,896 - 30,891,125 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,865,889 - 30,891,125 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1139,559,784 - 39,585,049 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01132,231,220 - 32,256,482 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01131,396,470 - 31,421,682 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01131,780,477 - 31,805,728 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,780,487 - 31,805,728 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01135,389,216 - 35,414,461 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41131,594,859 - 31,620,110 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11131,646,660 - 31,659,129 (-)NCBI
Celera1130,533,312 - 30,558,557 (-)NCBICelera
Cytogenetic Map11q11NCBI
GART
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22229,622,168 - 29,660,376 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12124,479,281 - 24,520,421 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02119,871,656 - 19,909,893 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12133,244,457 - 33,282,709 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2133,244,457 - 33,282,331 (-)Ensemblpanpan1.1panPan2
LOC487740
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13129,032,399 - 29,063,706 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Gart
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497128,685,224 - 28,715,394 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365008,753,463 - 8,786,236 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365008,750,928 - 8,782,303 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GART
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13197,130,904 - 197,161,891 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113197,130,898 - 197,158,797 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213206,941,099 - 206,971,945 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GART
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1258,641,566 - 58,682,014 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl258,643,877 - 58,683,023 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660711,144,831 - 1,183,711 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gart
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474521,734,282 - 21,762,734 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474521,735,431 - 21,763,330 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000017896   ⟹   ENSCLAP00000017721
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540732,944,164 - 32,973,863 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000017897   ⟹   ENSCLAP00000017722
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540732,944,164 - 32,973,775 (-)Ensembl
RefSeq Acc Id: XM_005375682   ⟹   XP_005375739
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540732,944,638 - 32,973,864 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375683   ⟹   XP_005375740
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540732,944,638 - 32,973,775 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375684   ⟹   XP_005375741
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540732,944,638 - 32,975,142 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375685   ⟹   XP_005375742
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540732,944,638 - 32,974,479 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005375741   ⟸   XM_005375684
- UniProtKB: A0A8C2VU50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005375742   ⟸   XM_005375685
- UniProtKB: A0A8C2VU50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005375739   ⟸   XM_005375682
- UniProtKB: A0A8C2VU50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005375740   ⟸   XM_005375683
- UniProtKB: A0A8C2VU50 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000017722   ⟸   ENSCLAT00000017897
Ensembl Acc Id: ENSCLAP00000017721   ⟸   ENSCLAT00000017896
Protein Domains
ATP-grasp


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012152 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017896 ENTREZGENE
  ENSCLAT00000017896.1 UniProtKB/TrEMBL
  ENSCLAT00000017897 ENTREZGENE
  ENSCLAT00000017897.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1330.10 UniProtKB/TrEMBL
  3.30.1490.20 UniProtKB/TrEMBL
  3.40.50.20 UniProtKB/TrEMBL
  3.90.600.10 UniProtKB/TrEMBL
  3.90.650.10 UniProtKB/TrEMBL
  ATP-grasp fold, B domain UniProtKB/TrEMBL
  Formyl transferase, N-terminal domain UniProtKB/TrEMBL
InterPro ATP-grasp UniProtKB/TrEMBL
  ATP_grasp_subdomain_1 UniProtKB/TrEMBL
  Formyl_transf_N UniProtKB/TrEMBL
  Formyl_transf_N_sf UniProtKB/TrEMBL
  GART UniProtKB/TrEMBL
  GART_AS UniProtKB/TrEMBL
  PreATP-grasp_dom_sf UniProtKB/TrEMBL
  PRibGlycinamid_synth_ATP-grasp UniProtKB/TrEMBL
  PRibGlycinamide_synth UniProtKB/TrEMBL
  PRibGlycinamide_synth_C-dom UniProtKB/TrEMBL
  PRibGlycinamide_synth_C_sf UniProtKB/TrEMBL
  PRibGlycinamide_synth_CS UniProtKB/TrEMBL
  PRibGlycinamide_synth_N UniProtKB/TrEMBL
  PurM-like_C_dom UniProtKB/TrEMBL
  PurM-like_C_sf UniProtKB/TrEMBL
  PurM-like_N UniProtKB/TrEMBL
  PurM-like_N_sf UniProtKB/TrEMBL
  PurM_cligase UniProtKB/TrEMBL
  Rudment_hybrid_motif UniProtKB/TrEMBL
NCBI Gene Gart ENTREZGENE
PANTHER PTHR10520 UniProtKB/TrEMBL
  TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3 UniProtKB/TrEMBL
Pfam AIRS UniProtKB/TrEMBL
  AIRS_C UniProtKB/TrEMBL
  Formyl_trans_N UniProtKB/TrEMBL
  GARS_A UniProtKB/TrEMBL
  GARS_C UniProtKB/TrEMBL
  GARS_N UniProtKB/TrEMBL
PROSITE ATP_GRASP UniProtKB/TrEMBL
  GARS UniProtKB/TrEMBL
  GART UniProtKB/TrEMBL
SMART GARS_A UniProtKB/TrEMBL
  GARS_C UniProtKB/TrEMBL
Superfamily-SCOP Glutathione synthetase ATP-binding domain-like UniProtKB/TrEMBL
  SSF51246 UniProtKB/TrEMBL
  SSF52440 UniProtKB/TrEMBL
  SSF53328 UniProtKB/TrEMBL
  SSF55326 UniProtKB/TrEMBL
  SSF56042 UniProtKB/TrEMBL
UniProt A0A8C2VU50 ENTREZGENE, UniProtKB/TrEMBL