Ythdf3 (YTH N6-methyladenosine RNA binding protein F3) - Rat Genome Database

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Gene: Ythdf3 (YTH N6-methyladenosine RNA binding protein F3) Chinchilla lanigera
Analyze
Symbol: Ythdf3
Name: YTH N6-methyladenosine RNA binding protein F3 (Ensembl:YTH N6-methyladenosine RNA binding protein 3)
RGD ID: 8794342
Description: ENCODES a protein that exhibits N6-methyladenosine-containing RNA reader activity (ortholog); ribosome binding (ortholog); RNA binding (ortholog); INVOLVED IN mRNA destabilization (ortholog); negative regulation of type I interferon-mediated signaling pathway (ortholog); organelle assembly (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); P-body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: YTH domain family, member 3; YTH domain-containing family protein 3; YTH N(6)-methyladenosine RNA binding protein 3; YTH N6-methyladenosine RNA binding protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544415,758,596 - 15,789,979 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544415,758,596 - 15,789,979 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ythdf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544415,758,596 - 15,789,979 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544415,758,596 - 15,789,979 (-)NCBIChiLan1.0ChiLan1.0
YTHDF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38863,168,553 - 63,212,788 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl863,168,553 - 63,212,786 (+)EnsemblGRCh38hg38GRCh38
GRCh37864,081,112 - 64,125,346 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36864,243,675 - 64,287,900 (+)NCBINCBI36Build 36hg18NCBI36
Build 34864,243,733 - 64,287,898NCBI
Celera860,071,751 - 60,115,983 (+)NCBICelera
Cytogenetic Map8q12.3NCBI
HuRef859,569,636 - 59,613,892 (+)NCBIHuRef
CHM1_1864,134,691 - 64,178,938 (+)NCBICHM1_1
T2T-CHM13v2.0863,593,718 - 63,637,958 (+)NCBIT2T-CHM13v2.0
Ythdf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39316,237,309 - 16,271,201 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl316,237,376 - 16,271,201 (+)EnsemblGRCm39 Ensembl
GRCm38316,183,148 - 16,217,037 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl316,183,212 - 16,217,037 (+)EnsemblGRCm38mm10GRCm38
MGSCv37316,083,183 - 16,117,037 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36316,375,401 - 16,409,006 (+)NCBIMGSCv36mm8
Celera316,207,826 - 16,241,750 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map34.04NCBI
Ythdf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82100,266,942 - 100,300,896 (+)NCBIGRCr8
mRatBN7.2298,350,304 - 98,384,608 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl298,350,588 - 98,384,606 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2104,900,698 - 104,933,772 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02103,021,801 - 103,054,881 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0298,060,111 - 98,093,174 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02100,677,388 - 100,711,365 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2100,677,411 - 100,710,417 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02120,415,556 - 120,449,533 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42100,852,768 - 100,885,774 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12100,797,898 - 100,831,297 (+)NCBI
Celera293,815,449 - 93,848,444 (+)NCBICelera
Cytogenetic Map2q24NCBI
YTHDF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2778,894,520 - 78,936,481 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1854,533,668 - 54,575,480 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0859,701,341 - 59,742,865 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1861,375,585 - 61,416,992 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl861,375,832 - 61,413,911 (+)Ensemblpanpan1.1panPan2
YTHDF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12913,239,900 - 13,280,035 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2913,239,966 - 13,277,051 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2913,565,045 - 13,605,151 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02913,341,056 - 13,381,205 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2913,341,035 - 13,381,200 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12913,352,242 - 13,392,349 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02913,469,674 - 13,510,035 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02913,735,808 - 13,775,969 (+)NCBIUU_Cfam_GSD_1.0
Ythdf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530364,423,434 - 64,462,139 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649610,323,296 - 10,362,163 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649610,323,338 - 10,362,150 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
YTHDF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl470,887,105 - 70,928,807 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1470,887,101 - 70,928,839 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2477,198,306 - 77,207,254 (-)NCBISscrofa10.2Sscrofa10.2susScr3
YTHDF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1859,046,407 - 59,089,021 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl859,046,140 - 59,090,425 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603982,493,022 - 82,535,890 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ythdf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474428,558,209 - 28,597,065 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474428,558,988 - 28,597,302 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003598   ⟹   ENSCLAP00000003524
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544415,758,596 - 15,789,979 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000003599   ⟹   ENSCLAP00000003525
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544415,772,842 - 15,787,820 (-)Ensembl
RefSeq Acc Id: XM_005392168   ⟹   XP_005392225
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544415,758,596 - 15,789,856 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005392169   ⟹   XP_005392226
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544415,758,596 - 15,789,979 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518190   ⟹   XP_013373644
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544415,758,596 - 15,788,481 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005392225 (Get FASTA)   NCBI Sequence Viewer  
  XP_005392226 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373644 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003524.1
  ENSCLAP00000003525.1
Reference Protein Sequences
RefSeq Acc Id: XP_005392226   ⟸   XM_005392169
- UniProtKB: A0A8C2UNK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005392225   ⟸   XM_005392168
- UniProtKB: A0A8C2UNK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373644   ⟸   XM_013518190
- UniProtKB: A0A8C2UNK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000003525   ⟸   ENSCLAT00000003599
RefSeq Acc Id: ENSCLAP00000003524   ⟸   ENSCLAT00000003598
Protein Domains
YTH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002515 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003598.1 UniProtKB/TrEMBL
  ENSCLAT00000003599.1 UniProtKB/TrEMBL
Gene3D-CATH ph1033 like domains UniProtKB/TrEMBL
InterPro YTH_domain UniProtKB/TrEMBL
  YTH_prot UniProtKB/TrEMBL
NCBI Gene Ythdf3 ENTREZGENE
PANTHER PTHR12357 UniProtKB/TrEMBL
  YTH DOMAIN-CONTAINING FAMILY PROTEIN 3 UniProtKB/TrEMBL
Pfam YTH UniProtKB/TrEMBL
PROSITE YTH UniProtKB/TrEMBL
Superfamily-SCOP beta-sandwich domain of Sec23/24 UniProtKB/TrEMBL
UniProt A0A8C2UNK1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UQ66_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-01-31 Ythdf3  YTH N6-methyladenosine RNA binding protein F3  Ythdf3  YTH N6-methyladenosine RNA binding protein 3  Symbol and/or name change 5135510 APPROVED
2016-08-03 Ythdf3  YTH N6-methyladenosine RNA binding protein 3    YTH N(6)-methyladenosine RNA binding protein 3  Symbol and/or name change 5135510 APPROVED
2015-08-25 Ythdf3  YTH N(6)-methyladenosine RNA binding protein 3    YTH domain family, member 3  Symbol and/or name change 5135510 APPROVED