Tyro3 (TYRO3 protein tyrosine kinase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tyro3 (TYRO3 protein tyrosine kinase) Chinchilla lanigera
Analyze
Symbol: Tyro3
Name: TYRO3 protein tyrosine kinase
RGD ID: 8792355
Description: ENCODES a protein that exhibits phosphatidylinositol 3-kinase binding (ortholog); protein tyrosine kinase activity (ortholog); virus receptor activity (ortholog); INVOLVED IN apoptotic cell clearance (ortholog); establishment of localization in cell (ortholog); forebrain cell migration (ortholog); ASSOCIATED WITH 46, XX Disorders of Sex Development (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum membrane (ortholog); nuclear envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tyrosine-protein kinase receptor TYRO3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,359,207 - 8,377,692 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,361,722 - 8,377,629 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tyro3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,359,207 - 8,377,692 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,361,722 - 8,377,629 (+)NCBIChiLan1.0ChiLan1.0
TYRO3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381541,559,212 - 41,583,589 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1541,557,675 - 41,583,589 (+)EnsemblGRCh38hg38GRCh38
GRCh371541,851,410 - 41,875,787 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361539,638,524 - 39,658,818 (+)NCBINCBI36Build 36hg18NCBI36
Build 341539,638,523 - 39,658,818NCBI
Celera1518,619,191 - 18,639,503 (+)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1518,699,536 - 18,719,735 (+)NCBIHuRef
CHM1_11541,969,757 - 41,990,068 (+)NCBICHM1_1
T2T-CHM13v2.01539,365,361 - 39,389,764 (+)NCBIT2T-CHM13v2.0
Tyro3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,628,123 - 119,648,585 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2119,628,214 - 119,648,585 (+)EnsemblGRCm39 Ensembl
GRCm382119,797,740 - 119,818,104 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,797,733 - 119,818,104 (+)EnsemblGRCm38mm10GRCm38
MGSCv372119,625,250 - 119,643,840 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362119,490,955 - 119,509,545 (+)NCBIMGSCv36mm8
Celera2120,956,991 - 120,973,578 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.97NCBI
Tyro3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,231,468 - 127,254,806 (+)NCBIGRCr8
mRatBN7.23106,777,686 - 106,797,154 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,777,635 - 106,797,142 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3110,453,352 - 110,472,381 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03119,048,900 - 119,067,929 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,709,292 - 116,728,321 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03111,597,102 - 111,616,142 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,597,102 - 111,616,142 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03118,145,366 - 118,165,796 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,309,671 - 106,328,607 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13106,206,098 - 106,225,035 (+)NCBI
Celera3105,690,533 - 105,707,759 (+)NCBICelera
Cytogenetic Map3q35NCBI
TYRO3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21630,800,411 - 30,820,731 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11534,951,644 - 34,976,218 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01520,499,789 - 20,520,152 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11538,739,509 - 38,760,288 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1538,739,509 - 38,760,288 (+)Ensemblpanpan1.1panPan2
TYRO3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1308,571,230 - 8,602,655 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl308,571,475 - 8,598,721 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha308,630,043 - 8,657,391 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0308,705,504 - 8,732,865 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl308,705,752 - 8,732,961 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1308,626,748 - 8,654,350 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0308,745,727 - 8,761,952 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0308,865,937 - 8,893,363 (+)NCBIUU_Cfam_GSD_1.0
Tyro3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864087,044,633 - 87,062,702 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364714,893,078 - 4,910,859 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364714,893,185 - 4,910,779 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TYRO3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1129,811,544 - 129,829,014 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11129,811,540 - 129,829,395 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21144,883,363 - 144,900,853 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TYRO3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12641,429,667 - 41,449,130 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2641,429,556 - 41,449,175 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604899,532,509 - 99,554,583 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tyro3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248048,710,821 - 8,728,072 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248048,711,487 - 8,729,025 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000014233   ⟹   ENSCLAP00000014076
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554168,359,207 - 8,376,593 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000014234   ⟹   ENSCLAP00000014077
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554168,360,093 - 8,377,692 (+)Ensembl
RefSeq Acc Id: XM_013512649   ⟹   XP_013368103
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554168,361,722 - 8,377,629 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013368103 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000014076.1
  ENSCLAP00000014077
  ENSCLAP00000014077.1
RefSeq Acc Id: XP_013368103   ⟸   XM_013512649
- UniProtKB: A0A8C2YPN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000014076   ⟸   ENSCLAT00000014233
RefSeq Acc Id: ENSCLAP00000014077   ⟸   ENSCLAT00000014234

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009717 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014233.1 UniProtKB/TrEMBL
  ENSCLAT00000014234 ENTREZGENE
  ENSCLAT00000014234.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/TrEMBL
NCBI Gene Tyro3 ENTREZGENE
PANTHER TYROSINE-PROTEIN KINASE RECEPTOR UniProtKB/TrEMBL
  TYROSINE-PROTEIN KINASE RECEPTOR TYRO3 UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  PK_Tyr_Ser-Thr UniProtKB/TrEMBL
PIRSF TyrPK_CSF1-R UniProtKB/TrEMBL
PRINTS TYRKINASE UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
  TyrKc UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt A0A8C2VDQ8_CHILA UniProtKB/TrEMBL
  A0A8C2YPN2 ENTREZGENE, UniProtKB/TrEMBL