LOC102005030 (olfactory receptor 226) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: LOC102005030 (olfactory receptor 226) Chinchilla lanigera
Analyze
Symbol: LOC102005030 (Ensembl: OR6A2)
Name: olfactory receptor 226
RGD ID: 8791005
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541422,706,291 - 22,707,274 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541422,706,291 - 22,707,274 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC102005030
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541422,706,291 - 22,707,274 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541422,706,291 - 22,707,274 (-)NCBIChiLan1.0ChiLan1.0
OR6A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,791,736 - 6,799,689 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,791,736 - 6,799,689 (-)EnsemblGRCh38hg38GRCh38
GRCh37116,812,967 - 6,820,920 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,772,332 - 6,773,715 (-)NCBINCBI36Build 36hg18NCBI36
Celera116,934,849 - 6,936,232 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef116,474,715 - 6,476,098 (-)NCBIHuRef
CHM1_1116,814,666 - 6,816,049 (-)NCBICHM1_1
T2T-CHM13v2.0116,850,158 - 6,858,111 (-)NCBIT2T-CHM13v2.0
Or6a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397106,600,082 - 106,601,812 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7106,594,606 - 106,605,279 (-)EnsemblGRCm39 Ensembl
GRCm387107,000,875 - 107,002,605 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7106,995,399 - 107,006,072 (-)EnsemblGRCm38mm10GRCm38
MGSCv377114,144,389 - 114,146,119 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367106,794,524 - 106,795,507 (-)NCBIMGSCv36mm8
Celera7107,026,760 - 107,028,491 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map756.1NCBI
Or6a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81170,239,077 - 170,240,060 (-)NCBIGRCr8
mRatBN7.21160,827,258 - 160,828,241 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1160,793,997 - 160,831,557 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1169,081,390 - 169,082,373 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01176,267,393 - 176,268,376 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01168,949,932 - 168,950,915 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01148,846,679 - 148,847,662 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1148,846,679 - 148,847,662 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1171,059,028 - 171,060,011 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01155,149,851 - 155,150,834 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41164,256,455 - 164,257,438 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11164,351,931 - 164,352,915 (-)NCBI
Celera1158,741,544 - 158,742,527 (-)NCBICelera
Cytogenetic Map1q33NCBI
LOC100974335
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v299,234,603 - 9,332,485 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1119,193,057 - 9,362,922 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0116,924,625 - 6,930,405 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,612,202 - 6,613,379 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,612,202 - 6,613,185 (-)Ensemblpanpan1.1panPan2
OR6A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12130,254,194 - 30,255,177 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2130,254,194 - 30,255,177 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2129,925,295 - 29,926,278 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02131,073,199 - 31,074,182 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2131,073,199 - 31,074,182 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12130,387,427 - 30,388,410 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02130,548,327 - 30,549,310 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02130,750,181 - 30,751,164 (-)NCBIUU_Cfam_GSD_1.0
LOC101975950
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494755,040,836 - 55,042,517 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493684145,223 - 46,348 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100738942
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl92,702,533 - 2,703,516 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.192,700,569 - 2,705,447 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.293,513,421 - 3,514,618 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103241237
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1158,032,819 - 58,036,267 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038155,803,171 - 155,804,165 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101698941
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248178,578,482 - 8,579,465 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248178,578,482 - 8,579,465 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005380180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01015472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCLAT00000026254   ⟹   ENSCLAP00000025948
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541422,706,291 - 22,707,274 (-)Ensembl
RefSeq Acc Id: XM_005380180   ⟹   XP_005380237
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541422,706,291 - 22,707,274 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005380237 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025948
  ENSCLAP00000025948.1
RefSeq Acc Id: XP_005380237   ⟸   XM_005380180
- UniProtKB: A0A8C2W6R6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000025948   ⟸   ENSCLAT00000026254

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000018080 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000026254 ENTREZGENE
  ENSCLAT00000026254.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC102005030 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C2W6R6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102005030  olfactory receptor 226    olfactory receptor 226-like  Symbol and/or name change 5135510 APPROVED