Abca6 (ATP binding cassette subfamily A member 6) - Rat Genome Database

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Gene: Abca6 (ATP binding cassette subfamily A member 6) Chinchilla lanigera
Analyze
Symbol: Abca6
Name: ATP binding cassette subfamily A member 6
RGD ID: 8790802
Description: ASSOCIATED WITH allergic contact dermatitis (ortholog); Colorectal Neoplasms (ortholog); genetic disease (ortholog); FOUND IN Golgi membrane (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family A member 6; ATP-binding cassette, sub-family A (ABC1), member 6
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554783,639,781 - 3,707,449 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554783,639,817 - 3,706,115 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Abca6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554783,639,781 - 3,707,449 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554783,639,817 - 3,706,115 (+)NCBIChiLan1.0ChiLan1.0
ABCA6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381769,078,702 - 69,141,895 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1769,078,702 - 69,141,895 (-)EnsemblGRCh38hg38GRCh38
GRCh371767,074,843 - 67,138,036 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361764,586,442 - 64,649,610 (-)NCBINCBI36Build 36hg18NCBI36
Build 341764,586,441 - 64,649,610NCBI
Celera1763,646,675 - 63,709,544 (-)NCBICelera
Cytogenetic Map17q24.2-q24.3NCBI
HuRef1762,460,603 - 62,523,371 (-)NCBIHuRef
CHM1_11767,139,673 - 67,202,552 (-)NCBICHM1_1
T2T-CHM13v2.01769,955,592 - 70,018,487 (-)NCBIT2T-CHM13v2.0
Abca6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911110,065,464 - 110,142,811 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11110,067,646 - 110,142,602 (-)EnsemblGRCm39 Ensembl
GRCm3811110,174,638 - 110,251,776 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11110,176,820 - 110,251,776 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711110,038,134 - 110,113,090 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611109,992,910 - 110,067,818 (-)NCBIMGSCv36mm8
Celera11121,913,016 - 121,989,859 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1173.37NCBI
Abca6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81095,642,026 - 95,711,535 (-)NCBIGRCr8
mRatBN7.21095,142,805 - 95,212,087 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1095,142,966 - 95,211,530 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01098,477,716 - 98,546,699 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1098,478,067 - 98,544,447 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01098,184,908 - 98,253,813 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41099,626,334 - 99,693,870 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11099,646,914 - 99,727,703 (-)NCBI
Celera1093,792,868 - 93,862,869 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
ABCA6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21985,081,270 - 85,171,106 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11789,915,074 - 89,982,612 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01763,006,916 - 63,069,941 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11768,396,083 - 68,458,795 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1768,396,083 - 68,458,795 (-)Ensemblpanpan1.1panPan2
ABCA6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1915,587,837 - 15,648,639 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl915,420,835 - 15,783,045 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha916,479,377 - 16,594,503 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0917,248,747 - 17,363,720 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl917,248,778 - 17,309,979 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1916,193,140 - 16,308,051 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0911,225,688 - 11,340,377 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0911,225,320 - 11,339,865 (+)NCBIUU_Cfam_GSD_1.0
LOC101961636
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560210,857,232 - 10,911,494 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365418,283,081 - 8,337,398 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365418,283,081 - 8,337,398 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCA6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1211,225,384 - 11,286,095 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11211,225,068 - 11,369,161 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21211,721,875 - 11,850,381 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABCA6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11652,450,398 - 52,511,256 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1652,451,146 - 52,511,107 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607723,352,612 - 23,413,343 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000007255   ⟹   ENSCLAP00000007143
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554783,639,781 - 3,707,449 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000007256   ⟹   ENSCLAP00000007144
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554783,639,781 - 3,707,449 (+)Ensembl
RefSeq Acc Id: XM_005402108   ⟹   XP_005402165
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554783,639,817 - 3,706,115 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005402109   ⟹   XP_005402166
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554783,639,817 - 3,706,115 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005402110   ⟹   XP_005402167
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554783,639,817 - 3,706,115 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005402165 (Get FASTA)   NCBI Sequence Viewer  
  XP_005402166 (Get FASTA)   NCBI Sequence Viewer  
  XP_005402167 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007143
  ENSCLAP00000007143.1
  ENSCLAP00000007144
  ENSCLAP00000007144.1
Reference Protein Sequences
RefSeq Acc Id: XP_005402166   ⟸   XM_005402109
- UniProtKB: A0A8C2UY80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005402165   ⟸   XM_005402108
- UniProtKB: A0A8C2UY80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005402167   ⟸   XM_005402110
- UniProtKB: A0A8C2UY80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000007144   ⟸   ENSCLAT00000007256
RefSeq Acc Id: ENSCLAP00000007143   ⟸   ENSCLAT00000007255
Protein Domains
ABC transporter


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005025 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007255 ENTREZGENE
  ENSCLAT00000007255.1 UniProtKB/TrEMBL
  ENSCLAT00000007256 ENTREZGENE
  ENSCLAT00000007256.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC2_TM UniProtKB/TrEMBL
  ABC_transporter-like_ATP-bd UniProtKB/TrEMBL
  ABCA UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Abca6 ENTREZGENE
PANTHER PTHR19229 UniProtKB/TrEMBL
  PTHR19229:SF13 UniProtKB/TrEMBL
Pfam ABC2_membrane_3 UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2UY80 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Abca6  ATP binding cassette subfamily A member 6    ATP-binding cassette, sub-family A (ABC1), member 6  Symbol and/or name change 5135510 APPROVED