Zswim7 (zinc finger SWIM-type containing 7) - Rat Genome Database

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Gene: Zswim7 (zinc finger SWIM-type containing 7) Chinchilla lanigera
Analyze
Symbol: Zswim7
Name: zinc finger SWIM-type containing 7
RGD ID: 8790547
Description: INVOLVED IN double-strand break repair via homologous recombination (ortholog); protein stabilization (ortholog); ASSOCIATED WITH genetic disease (ortholog); infertility (ortholog); mitochondrial complex III deficiency nuclear type 1 (ortholog); FOUND IN Shu complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger SWIM domain-containing protein 7; zinc finger, SWIM-type containing 7
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554671,364,372 - 1,381,083 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554671,364,044 - 1,381,101 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Shu complex  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zswim7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554671,364,372 - 1,381,083 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554671,364,044 - 1,381,101 (-)NCBIChiLan1.0ChiLan1.0
ZSWIM7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381715,976,560 - 15,999,704 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1715,976,560 - 15,999,717 (-)EnsemblGRCh38hg38GRCh38
GRCh371715,879,874 - 15,903,018 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361715,820,599 - 15,843,731 (-)NCBINCBI36Build 36hg18NCBI36
Celera1715,782,880 - 15,806,013 (-)NCBICelera
Cytogenetic Map17p12NCBI
HuRef1715,747,186 - 15,770,054 (-)NCBIHuRef
CHM1_11715,888,634 - 15,912,292 (-)NCBICHM1_1
T2T-CHM13v2.01715,878,745 - 15,901,920 (-)NCBIT2T-CHM13v2.0
Zswim7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,158,050 - 62,172,221 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,158,050 - 62,172,201 (-)EnsemblGRCm39 Ensembl
GRCm381162,267,224 - 62,281,395 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,267,224 - 62,281,375 (-)EnsemblGRCm38mm10GRCm38
MGSCv371162,080,726 - 62,094,897 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,083,410 - 62,097,635 (-)NCBIMGSCv36mm8
MGSCv361162,700,101 - 62,714,326 (-)NCBIMGSCv36mm8
Celera1168,110,278 - 68,111,873 (-)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1137.99NCBI
Zswim7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81047,456,843 - 47,469,084 (-)NCBIGRCr8
mRatBN7.21046,953,311 - 46,969,800 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1046,957,525 - 46,969,671 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1051,661,311 - 51,673,404 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,151,861 - 51,163,954 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01046,655,269 - 46,667,362 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01048,587,117 - 48,599,208 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1048,587,119 - 48,599,208 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01048,375,622 - 48,387,713 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41048,438,718 - 48,450,809 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11048,452,340 - 48,464,513 (-)NCBI
Celera1046,203,432 - 46,215,523 (-)NCBICelera
Cytogenetic Map10q23NCBI
ZSWIM7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1539,868,086 - 39,883,693 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl539,868,123 - 39,882,557 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha540,014,407 - 40,030,556 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0539,977,876 - 39,994,037 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl539,977,936 - 39,992,776 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1539,950,116 - 39,966,264 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0539,895,384 - 39,911,528 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0540,086,652 - 40,102,800 (+)NCBIUU_Cfam_GSD_1.0
Zswim7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,226,416 - 59,244,847 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936821567,439 - 582,458 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936821567,397 - 582,177 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSWIM7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,418,924 - 59,436,604 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,418,905 - 59,434,689 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZSWIM7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11615,662,268 - 15,681,875 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1615,662,215 - 15,681,561 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660595,278,752 - 5,298,460 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zswim7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248774,404,345 - 4,420,079 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248774,404,174 - 4,427,085 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008964   ⟹   ENSCLAP00000008836
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554671,364,372 - 1,381,083 (-)Ensembl
RefSeq Acc Id: XM_005415365   ⟹   XP_005415422
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554671,364,044 - 1,381,101 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522049   ⟹   XP_013377503
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554671,364,044 - 1,381,101 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005415422 (Get FASTA)   NCBI Sequence Viewer  
  XP_013377503 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000008836.1
Reference Protein Sequences
RefSeq Acc Id: XP_005415422   ⟸   XM_005415365
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V2G3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377503   ⟸   XM_013522049
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000008836   ⟸   ENSCLAT00000008964
Protein Domains
SWIM-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006174 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008964.1 UniProtKB/TrEMBL
InterPro Znf_SWIM UniProtKB/TrEMBL
NCBI Gene Zswim7 ENTREZGENE
PANTHER ZINC FINGER SWIM DOMAIN-CONTAINING PROTEIN 7 UniProtKB/TrEMBL
  ZINC FINGER SWIM DOMAIN-CONTAINING PROTEIN 7 UniProtKB/TrEMBL
Pfam SWIM UniProtKB/TrEMBL
PROSITE ZF_SWIM UniProtKB/TrEMBL
UniProt A0A8C2V2G3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Zswim7  zinc finger SWIM-type containing 7    zinc finger, SWIM-type containing 7  Symbol and/or name change 5135510 APPROVED