Myo6 (myosin VI) - Rat Genome Database

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Gene: Myo6 (myosin VI) Chinchilla lanigera
Analyze
Symbol: Myo6
Name: myosin VI
RGD ID: 8789005
Description: ENCODES a protein that exhibits actin filament binding (ortholog); ADP binding (ortholog); calmodulin binding (ortholog); INVOLVED IN actin filament-based movement (ortholog); cellular response to electrical stimulus (ortholog); chemical synaptic transmission (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; E-cadherin signaling pathway; ASSOCIATED WITH autosomal dominant nonsyndromic deafness (ortholog); autosomal dominant nonsyndromic deafness 22 (ortholog); autosomal recessive nonsyndromic deafness 37 (ortholog); FOUND IN actin filament (ortholog); apical part of cell (ortholog); axon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: unconventional myosin-VI
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555024,218,885 - 4,356,988 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555024,219,067 - 4,356,988 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Myo6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555024,218,885 - 4,356,988 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555024,219,067 - 4,356,988 (+)NCBIChiLan1.0ChiLan1.0
MYO6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38675,749,239 - 75,919,537 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl675,749,201 - 75,919,537 (+)EnsemblGRCh38hg38GRCh38
GRCh37676,458,956 - 76,629,254 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36676,515,629 - 76,685,974 (+)NCBINCBI36Build 36hg18NCBI36
Build 34676,515,702 - 76,682,665NCBI
Celera676,852,216 - 77,022,585 (+)NCBICelera
Cytogenetic Map6q14.1NCBI
HuRef673,657,457 - 73,828,024 (+)NCBIHuRef
CHM1_1676,625,146 - 76,795,504 (+)NCBICHM1_1
T2T-CHM13v2.0676,926,117 - 77,096,418 (+)NCBIT2T-CHM13v2.0
Myo6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39980,072,262 - 80,219,011 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl980,072,313 - 80,219,011 (+)EnsemblGRCm39 Ensembl
GRCm38980,164,976 - 80,311,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl980,165,031 - 80,311,729 (+)EnsemblGRCm38mm10GRCm38
MGSCv37980,012,841 - 80,159,536 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36979,950,724 - 80,097,413 (+)NCBIMGSCv36mm8
Celera977,304,677 - 77,455,393 (+)NCBICelera
Cytogenetic Map9E1NCBI
cM Map943.98NCBI
Myo6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8889,967,351 - 90,122,219 (+)NCBIGRCr8
mRatBN7.2881,087,157 - 81,242,022 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl881,087,139 - 81,239,292 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0887,583,649 - 87,731,271 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl887,630,916 - 87,731,269 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0887,121,910 - 87,268,900 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4885,203,987 - 85,368,026 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera880,810,746 - 80,962,891 (+)NCBICelera
Cytogenetic Map8q31NCBI
MYO6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2595,797,543 - 95,965,239 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1693,675,327 - 93,845,906 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0673,593,794 - 73,764,352 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1676,882,994 - 77,050,015 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl676,951,634 - 77,048,796 (+)Ensemblpanpan1.1panPan2
MYO6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11237,359,200 - 37,502,342 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1237,413,570 - 37,500,724 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1237,238,751 - 37,384,310 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01238,063,158 - 38,289,614 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1238,063,189 - 38,287,255 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11237,466,515 - 37,612,373 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01237,455,898 - 37,602,259 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01237,586,007 - 37,731,589 (+)NCBIUU_Cfam_GSD_1.0
Myo6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494672,743,121 - 72,882,178 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367881,174,544 - 1,262,746 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367881,125,332 - 1,264,372 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYO6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl189,992,866 - 90,137,734 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1189,992,860 - 90,137,767 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21100,972,527 - 101,143,888 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYO6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.113527,361 - 620,418 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl13457,495 - 618,858 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040176,761,726 - 176,924,982 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myo6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248192,896,374 - 2,999,819 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248192,835,783 - 2,999,819 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000002200   ⟹   ENSCLAP00000002154
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555024,218,885 - 4,356,988 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002201   ⟹   ENSCLAP00000002155
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555024,218,885 - 4,356,988 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002202   ⟹   ENSCLAP00000002156
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555024,218,885 - 4,356,988 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002203   ⟹   ENSCLAP00000002157
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555024,219,067 - 4,356,988 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002204   ⟹   ENSCLAP00000002158
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555024,264,162 - 4,355,060 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002205   ⟹   ENSCLAP00000002159
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555024,264,162 - 4,355,057 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002206   ⟹   ENSCLAP00000002160
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555024,264,162 - 4,355,057 (+)Ensembl
RefSeq Acc Id: XM_005406898   ⟹   XP_005406955
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555024,219,067 - 4,356,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013505831   ⟹   XP_013361285
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555024,219,067 - 4,356,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013505832   ⟹   XP_013361286
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555024,219,067 - 4,356,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013505833   ⟹   XP_013361287
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555024,219,068 - 4,356,988 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013505834   ⟹   XP_013361288
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555024,219,069 - 4,356,988 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005406955   ⟸   XM_005406898
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UK92 (UniProtKB/TrEMBL),   A0A8C2ULW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361285   ⟸   XM_013505831
- Peptide Label: isoform X2
- UniProtKB: A0A8C2ULW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361286   ⟸   XM_013505832
- Peptide Label: isoform X3
- UniProtKB: A0A8C2YIZ5 (UniProtKB/TrEMBL),   A0A8C2ULW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361287   ⟸   XM_013505833
- Peptide Label: isoform X4
- UniProtKB: A0A8C2UKB1 (UniProtKB/TrEMBL),   A0A8C2ULW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361288   ⟸   XM_013505834
- Peptide Label: isoform X5
- UniProtKB: A0A8C2UM52 (UniProtKB/TrEMBL),   A0A8C2URM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000002160   ⟸   ENSCLAT00000002206
RefSeq Acc Id: ENSCLAP00000002157   ⟸   ENSCLAT00000002203
RefSeq Acc Id: ENSCLAP00000002156   ⟸   ENSCLAT00000002202
RefSeq Acc Id: ENSCLAP00000002159   ⟸   ENSCLAT00000002205
RefSeq Acc Id: ENSCLAP00000002158   ⟸   ENSCLAT00000002204
RefSeq Acc Id: ENSCLAP00000002155   ⟸   ENSCLAT00000002201
RefSeq Acc Id: ENSCLAP00000002154   ⟸   ENSCLAT00000002200

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001561 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000002200 ENTREZGENE
  ENSCLAT00000002200.1 UniProtKB/TrEMBL
  ENSCLAT00000002201 ENTREZGENE
  ENSCLAT00000002201.1 UniProtKB/TrEMBL
  ENSCLAT00000002202 ENTREZGENE
  ENSCLAT00000002202.1 UniProtKB/TrEMBL
  ENSCLAT00000002203 ENTREZGENE
  ENSCLAT00000002203.1 UniProtKB/TrEMBL
  ENSCLAT00000002204.1 UniProtKB/TrEMBL
  ENSCLAT00000002205.1 UniProtKB/TrEMBL
  ENSCLAT00000002206.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.820 UniProtKB/TrEMBL
  1.20.58.530 UniProtKB/TrEMBL
  2.30.30.360 UniProtKB/TrEMBL
  3.30.70.1590 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
  6.10.220.10 UniProtKB/TrEMBL
  Myosin VI head, motor domain, U50 subdomain UniProtKB/TrEMBL
InterPro Kinesin_motor_dom_sf UniProtKB/TrEMBL
  MYO6_lever UniProtKB/TrEMBL
  Myosin-VI_CBD UniProtKB/TrEMBL
  Myosin_head_motor_dom UniProtKB/TrEMBL
  Myosin_N UniProtKB/TrEMBL
  Myosin_S1_N UniProtKB/TrEMBL
  MYSc_Myo6 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Myo6 ENTREZGENE
PANTHER MYOSIN UniProtKB/TrEMBL
  UNCONVENTIONAL MYOSIN-VI UniProtKB/TrEMBL
Pfam MYO6_lever UniProtKB/TrEMBL
  Myosin-VI_CBD UniProtKB/TrEMBL
  Myosin_head UniProtKB/TrEMBL
PRINTS MYOSINHEAVY UniProtKB/TrEMBL
PROSITE MYOSIN_MOTOR UniProtKB/TrEMBL
  SH3_LIKE UniProtKB/TrEMBL
SMART MYSc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2UK92 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UKB1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2ULW9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UM52 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2URM6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YIZ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YIZ8_CHILA UniProtKB/TrEMBL