| Gene: Pp2d1 (protein phosphatase 2C like domain containing 1) Chinchilla lanigera |
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Analyze |
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| Symbol: |
Pp2d1 |
| Name: |
protein phosphatase 2C like domain containing 1 |
| RGD ID: |
8784938 |
| Description: |
ASSOCIATED WITH 3p deletion syndrome (ortholog) |
| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| RGD Orthologs |
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| Alliance Genes |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955430 | 12,040,197 - 12,069,254 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955430 | 12,039,391 - 12,070,440 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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Imported Disease Annotations - ClinVar
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References
Additional References at PubMed
Genomics
Comparative Map Data
Pp2d1
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955430 | 12,040,197 - 12,069,254 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955430 | 12,039,391 - 12,070,440 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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PP2D1
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 3 | 19,979,961 - 20,012,264 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 3 | 19,979,961 - 20,012,267 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 3 | 20,021,453 - 20,053,756 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 3 | 20,017,509 - 20,028,730 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 3 | 19,961,983 - 19,994,294 (-) | NCBI | | Celera | | | Cytogenetic Map | 3 | p24.3 | NCBI | | | | | HuRef | 3 | 19,961,295 - 19,993,407 (-) | NCBI | | HuRef | | | CHM1_1 | 3 | 19,973,542 - 20,005,850 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 3 | 19,984,029 - 20,016,332 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Pp2d1
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 17 | 53,814,488 - 53,846,479 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 17 | 53,814,488 - 53,846,479 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 17 | 53,507,460 - 53,539,451 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 17 | 53,507,460 - 53,539,451 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 17 | 53,646,785 - 53,678,776 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 17 | 52,972,389 - 53,004,380 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 17 | 56,952,974 - 56,985,026 (-) | NCBI | | Celera | | | Cytogenetic Map | 17 | C | NCBI | | | | | cM Map | 17 | 27.83 | NCBI | | | | |
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Pp2d1
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 9 | 6,749,236 - 6,770,235 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 9 | 6,512,282 - 6,533,653 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 9 | 6,512,657 - 6,533,639 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 9 | 7,658,531 - 7,679,530 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 9 | 12,816,069 - 12,837,068 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 9 | 11,980,423 - 12,001,418 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 14 | 72,948,241 - 72,970,335 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 14 | 72,948,124 - 72,970,329 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 14 | 72,968,262 - 72,989,251 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 9 | 1,470,847 - 1,491,827 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Cytogenetic Map | 9 | q11 | NCBI | | | | |
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PP2D1
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 2 | 19,950,432 - 19,978,108 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 3 | 19,955,199 - 19,982,875 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 3 | 19,903,905 - 19,930,536 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 3 | 20,233,819 - 20,261,322 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 3 | 20,233,831 - 20,261,322 (-) | Ensembl | panpan1.1 | | panPan2 | |
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PP2D1
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 23 | 23,285,449 - 23,303,885 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 23 | 23,285,452 - 23,305,086 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 23 | 23,310,653 - 23,329,094 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 23 | 23,772,245 - 23,790,718 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 23 | 23,772,269 - 23,791,922 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 23 | 23,484,470 - 23,502,924 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 23 | 23,549,864 - 23,568,327 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 23 | 23,795,983 - 23,814,442 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Pp2d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405118 | 179,127,574 - 179,153,163 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936473 | 12,267,538 - 12,285,582 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936473 | 12,267,353 - 12,291,505 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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PP2D1
(Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 13 | 6,939,517 - 6,961,810 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 13 | 6,939,990 - 6,958,513 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 13 | 7,918,804 - 7,940,945 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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PP2D1
(Chlorocebus sabaeus - green monkey) |
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Pp2d1
(Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
| RefSeq Acc Id: |
ENSCLAT00000009160 ⟹ ENSCLAP00000009032 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 Ensembl | NW_004955430 | 12,040,197 - 12,069,254 (-) | Ensembl |
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| RefSeq Acc Id: |
XM_005387461 ⟹ XP_005387518 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 | NW_004955430 | 12,039,391 - 12,070,440 (-) | NCBI |
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| Sequence: |
CAGCGTTTGCCCCTGGGGGTCCCCCGGCAGTGTCTGCTGCGGACCGGGGCTGCTATTGGCCGGC
AGGGCCTGTGGTCCCGAGCAAAAGCTGGAGGCAGAGAAACGCGGACAAGGGCAGGCTGAACCGT
GACAGACACCTCTGCATCTGGGGGAACACTCACCGACTGATGGCAGCATCCGGATACGATGTCC
CCCAAATCTCCTATGAATTCCTTCCTCGGGCAGCTCCAAGTGGAACCACGCAGCCAGAAGACTA
TGCTACTTTAGAATTTCCAGAGACGGGCTTGTGAGAAACACACTTTGTGACCCATTGTCTCACA
GTTCTGAATCGCGACCGAGGTTCCAGGCGAGGCTGCGGACATTCCACACAGGAAGTGCTGACAT
CAAGCCAGGAAGCTCCTCCACTGCCACCCACCACCTCCTGCTCTGCACCCTCCACCAAGGGTCA
AGGGACCCGGGGGCGTGCCGAGAAGGCAAAGAGAACATTGCCAGAGGAACATGAATGGTGCTAG
TGCTTTCAGAGTGTTTTGGAAAACAAAAGAATGGGATAGGAAAAAATCAACCTTTGATTCAGAG
GAAGATACTTCATTTATACTTAAAAAAAAAAGGTGTTTCCAAAAGAAAGATTCGGGGGCATCAG
AGGGCAGTGCAGATGATGAGGAGCAGCTGGTCTGTCAACAAGGGATCACGTTTCCCTGTTCCAT
CTGCAAGCAGGAAGTTGAAACCGCTGGTGCTTTTGTCCACAAGCAGGAACACATAGCTCTGGCT
GCACTGGGTCTCCAGTGGCGGGGTGGGAAGAAGCAGCCAGCCTCTAAGATTGTTGCTCAGAGAC
AGATTTTAATTGCTAACCTGTTGTCCTCCTCTATGCTCAATGAAAAGGTCCTACAGAGCATTAA
TAATGCTTTTGAGCTACTTTGGCACAAACGAATACCAGTACAGTATAAGATTTTTGATACCATC
CACAGGAGCTATGTATATTCTCAAAAAATCTATCATCTGTTAATTAAAGGAGTGGCCGTCTGTG
AAGATAGGATTTCTACCAGGAAAACTGAAATGAACGATAACTTCATGATGATAAATAATTTTGG
CAACAAACCCAACGTGTGTTTCTTCAGTTTGTTTGATGGACATCAAGGTGCCTCGGCAGCAGAC
TTCATGTCAGCAGAATTCCCGGTTTTGCTTCTCCACCAACTGTCTAAATTTGACCCTTGTTACC
AGATGACCCCAGAACAGCAGCAAGTGGTTGATTCCTTTGACAGCATCTTTAGAGAGGACTATAC
GGCGATCGAAGATCTCTTCTCATCTACAAAGACAAACCCCAGCAGGCACAGGTGTAATTATGAG
GATACGCACAAGGCCTTTGCAAAAGCATTTTGGAGGATGGATAAACTCTTACGTCTTGGAAGGA
AAGAAGGCTCCAGGGTGCTGTGGAGTGGCTGCTCCGTGGTTACTTGCATACTGGAAGGCAAAAT
TAAATACCCGTATGCCAATATGAATTGGAAAAAAATCAACAGCAGGCATAAATTGGCAGAGAGC
TTCCCCTCCCAGATGGTGCCACAAATAATTTCTGGAATATTACACATTGCAAACACTGGTAACG
TGCAAGCAGTCTTATGCAGAAATGGAAAAGGATTTTGTCTCACCAAAGAACACACCACAGAGAA
CACCAGTGAAAGAAGAAGAGTCCTTCAGAGTGGAGCACTAATTACTTCGACTGAACCGTATGGG
CTCTTGGAAGGGCAAACAAAGACGACACGAGGCCTTGGATTTCATGGAGATCTCAAGCTGAAAA
AATTTATTATCCCAGCACCTGAAACTATTTCTGTCCCTATTGATGACTTATGTCAATTCCTTAT
CTTAGCTACTAATGGACTCTGGGAAGTTCTGGATAAAGAGGAAGTCATAGCACTGACAATAACC
CTGTTTCAGATATACAAGGAAACATGTGCTCCCATCATACAGAACAAGTCACAATGCATGAAGC
CTCTGTATCTTTCAATCAGTGATACAGGCATTCCTGAATCAGAAAGTAATATTCATGTATTGTT
TCAATATAACCCTGAATCTAATGAATATGTGTCAACTACAAATTTAAAGACAAAACTGTCTGAT
TTAAAATATTCTGAACACTTTAAGTCTAAAAATGTGGAAACATTTCCACCACAAATGACTAATC
ATGAAGCTTGCAGGGAGGAAGAGACTGCCAGCCCACCCAGTGCAGACAATGCACAAACAAGCGA
AGAAGACTCGCCAGACACGAGGAATTTCTTTGAAGGTGCAGCTGAGTATATCAGCCGTGAGCTT
GTAAATGCTGCTCTGGAGGCCGGTTCCAGAGACAATATTACAGTGATGGTAATATTTCTCAATG
GAAGTGAGTATCAGTTGCTGATGTAAAAAATTAAGTTCCAGTTATTCAGAGAACCAAAATATAT
TGCTACAAAGACAGTTCTTCAGTAAAACAAGTATTAGGATGATACATCAACACCATGGGAAATA
ATTTTTCAGACCACAGTAAAGAAAATATAAAGGCAGACTTTAGGCTATGTATGTTCACTGTTTT
ATGCCAAAAAAGAGAGAAAAACTAGTATTTGCTTTTTTACCACTTTATTCCAACCTGAGCACCT
CAATATAAAACTAAACACTGGTGAACTGTTTTCCTTGCTAATTCTGAATTACCGTAAAATGTAC
AAGAGGTCTGCTAAGAGTTCGACACTTAAATAGATTAAATCATCTGACGCATGGTAGATTTCAT
ATAATGAAAATACCTAGAAATTAGTGCAATATACGGAACTTATCAAAATAAAGTGGACTTTGAA
AAACAAGGCTGCAAGATAAATGTTACTAACATTGTAATATTTATGTTACAAATTACAGACACAT
TTCTTATTATGGTTCTGGCCATGTAGGAACTGAAGCCCCTTCTTTGCAAAGGGTGAGAGGAAGA
ATTAGCTGTTTTAGTAACTGTACACTTTGTATACTTTTAAGCAACTCTTAAATATTACAGAAAA
CAATAAACATATATGGAGGTTACAATGCAGTACCCTATTTACAGTACAGCTGAAGATAAAATTT
AAAACAAGTTTGAATGTACATAATTGTTAGTGCACTGACTGTACTACGTCCAAGGGGACAGAAG
CCTCTTCCCTGCCCCAAACAAGACCTATGTAACGGCCTGCAGTGATTGGAAAAAAAAAATCAGA
hide sequence
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| RefSeq Acc Id: |
XP_005387518 ⟸ XM_005387461 |
| - UniProtKB: |
A0A8C2V6V3 (UniProtKB/TrEMBL) |
| - Sequence: |
MNGASAFRVFWKTKEWDRKKSTFDSEEDTSFILKKKRCFQKKDSGASEGSADDEEQLVCQQGIT
FPCSICKQEVETAGAFVHKQEHIALAALGLQWRGGKKQPASKIVAQRQILIANLLSSSMLNEKV
LQSINNAFELLWHKRIPVQYKIFDTIHRSYVYSQKIYHLLIKGVAVCEDRISTRKTEMNDNFMM
INNFGNKPNVCFFSLFDGHQGASAADFMSAEFPVLLLHQLSKFDPCYQMTPEQQQVVDSFDSIF
REDYTAIEDLFSSTKTNPSRHRCNYEDTHKAFAKAFWRMDKLLRLGRKEGSRVLWSGCSVVTCI
LEGKIKYPYANMNWKKINSRHKLAESFPSQMVPQIISGILHIANTGNVQAVLCRNGKGFCLTKE
HTTENTSERRRVLQSGALITSTEPYGLLEGQTKTTRGLGFHGDLKLKKFIIPAPETISVPIDDL
CQFLILATNGLWEVLDKEEVIALTITLFQIYKETCAPIIQNKSQCMKPLYLSISDTGIPESESN
IHVLFQYNPESNEYVSTTNLKTKLSDLKYSEHFKSKNVETFPPQMTNHEACREEETASPPSADN
AQTSEEDSPDTRNFFEGAAEYISRELVNAALEAGSRDNITVMVIFLNGSEYQLLM
hide sequence
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| RefSeq Acc Id: |
ENSCLAP00000009032 ⟸ ENSCLAT00000009160 |
Additional Information
Nomenclature History
| Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
| 2016-08-03 |
Pp2d1 |
protein phosphatase 2C like domain containing 1 |
|
protein phosphatase 2C-like domain containing 1 |
Symbol and/or name change |
5135510 |
APPROVED |
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