Ptprf (protein tyrosine phosphatase receptor type F) - Rat Genome Database

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Gene: Ptprf (protein tyrosine phosphatase receptor type F) Chinchilla lanigera
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Symbol: Ptprf
Name: protein tyrosine phosphatase receptor type F
RGD ID: 8783238
Description: ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); chondroitin sulfate proteoglycan binding (ortholog); insulin receptor binding (ortholog); INVOLVED IN cell migration (ortholog); homophilic cell adhesion via plasma membrane adhesion molecules (ortholog); negative regulation of cell population proliferation (ortholog); PARTICIPATES IN insulin signaling pathway; ASSOCIATED WITH Breasts and/or Nipples, Aplasia or Hypoplasia of, 2 (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); congestive heart failure (ortholog); FOUND IN endosome (ortholog); excitatory synapse (ortholog); growth cone (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: receptor-type tyrosine-protein phosphatase F
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555373,096,603 - 3,185,682 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555373,096,601 - 3,185,682 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Ptprf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555373,096,603 - 3,185,682 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555373,096,601 - 3,185,682 (+)NCBIChiLan1.0ChiLan1.0
PTPRF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl143,525,187 - 43,623,666 (+)EnsemblGRCh38hg38GRCh38
GRCh38143,522,238 - 43,623,666 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37143,991,708 - 44,089,337 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36143,769,134 - 43,861,930 (+)NCBINCBI36hg18NCBI36
Build 34143,665,639 - 43,758,427NCBI
Celera142,278,501 - 42,371,223 (+)NCBI
Cytogenetic Map1p34.2NCBI
HuRef142,115,737 - 42,210,000 (+)NCBIHuRef
CHM1_1144,112,964 - 44,205,662 (+)NCBICHM1_1
Ptprf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394118,065,410 - 118,148,602 (-)NCBIGRCm39mm39
GRCm39 Ensembl4118,065,410 - 118,148,602 (-)Ensembl
GRCm384118,208,213 - 118,291,405 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4118,208,213 - 118,291,405 (-)EnsemblGRCm38mm10GRCm38
MGSCv374117,880,818 - 117,964,002 (-)NCBIGRCm37mm9NCBIm37
MGSCv364117,707,733 - 117,775,378 (-)NCBImm8
Celera4116,924,108 - 117,000,571 (-)NCBICelera
Cytogenetic Map4D2.1NCBI
Ptprf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25131,741,959 - 131,824,000 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl5137,036,935 - 137,112,927 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05137,036,936 - 137,112,930 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05140,825,315 - 140,901,672 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,671,725 - 138,739,002 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15138,676,940 - 138,744,228 (-)NCBI
Celera5130,289,962 - 130,357,275 (-)NCBICelera
Cytogenetic Map5q36NCBI
PTPRF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1144,202,298 - 44,299,309 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl144,220,991 - 44,297,647 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0142,878,344 - 42,923,539 (+)NCBIMhudiblu_PPA_v0panPan3
PTPRF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,590,908 - 16,666,673 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,591,308 - 16,666,673 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1516,715,596 - 16,802,435 (-)NCBI
ROS_Cfam_1.01516,749,545 - 16,780,639 (-)NCBI
UMICH_Zoey_3.11516,547,414 - 16,635,530 (-)NCBI
UNSW_CanFamBas_1.01516,616,690 - 16,703,670 (-)NCBI
UU_Cfam_GSD_1.01516,689,993 - 16,777,132 (-)NCBI
Ptprf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505859,083,308 - 59,159,896 (+)NCBI
SpeTri2.0NW_00493647424,908,103 - 24,984,678 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,656,680 - 167,743,721 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,656,674 - 167,743,750 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26155,043,861 - 155,112,457 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12089,192,426 - 89,284,989 (-)NCBI
ChlSab1.1 Ensembl2089,191,660 - 89,284,970 (-)Ensembl
Vero_WHO_p1.0NW_02366603327,638,913 - 27,731,698 (+)NCBI
Ptprf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248922,825,771 - 2,932,854 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000007639   ⟹   ENSCLAP00000007522
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555373,096,603 - 3,185,682 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000007640   ⟹   ENSCLAP00000007523
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555373,109,689 - 3,184,089 (+)Ensembl
RefSeq Acc Id: XM_005410662   ⟹   XP_005410719
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555373,096,601 - 3,185,682 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005410663   ⟹   XP_005410720
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555373,096,602 - 3,185,682 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005410664   ⟹   XP_005410721
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555373,096,603 - 3,185,682 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005410665   ⟹   XP_005410722
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555373,096,603 - 3,185,682 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005410670   ⟹   XP_005410727
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555373,096,601 - 3,185,682 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005410719   ⟸   XM_005410662
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005410727   ⟸   XM_005410670
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_005410720   ⟸   XM_005410663
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005410721   ⟸   XM_005410664
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005410722   ⟸   XM_005410665
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSCLAP00000007523   ⟸   ENSCLAT00000007640
RefSeq Acc Id: ENSCLAP00000007522   ⟸   ENSCLAT00000007639


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005282 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000007522 ENTREZGENE
  ENSCLAP00000007523 ENTREZGENE
Ensembl Transcript ENSCLAT00000007639 ENTREZGENE
  ENSCLAT00000007640 ENTREZGENE
NCBI Gene Ptprf ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-19 Ptprf  protein tyrosine phosphatase receptor type F    protein tyrosine phosphatase, receptor type F  Symbol and/or name change 5135510 APPROVED
2016-08-03 Ptprf  protein tyrosine phosphatase, receptor type F    protein tyrosine phosphatase, receptor type, F  Symbol and/or name change 5135510 APPROVED