Washc5 (WASH complex subunit 5) - Rat Genome Database

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Gene: Washc5 (WASH complex subunit 5) Chinchilla lanigera
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Symbol: Washc5
Name: WASH complex subunit 5
RGD ID: 8783182
Description: INVOLVED IN endosomal transport (ortholog); lysosome organization (ortholog); meiotic spindle assembly (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia (ortholog); hereditary spastic paraplegia 10 (ortholog); FOUND IN early endosome (ortholog); endosome (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Kiaa0196; KIAA0196 ortholog; WASH complex subunit strumpellin
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955461145,993 - 199,903 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955461145,993 - 199,274 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Washc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955461145,993 - 199,903 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955461145,993 - 199,274 (-)NCBIChiLan1.0ChiLan1.0
WASHC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388125,024,260 - 125,091,792 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8125,024,260 - 125,091,819 (-)EnsemblGRCh38hg38GRCh38
GRCh378126,036,502 - 126,104,034 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368126,105,684 - 126,173,243 (-)NCBINCBI36Build 36hg18NCBI36
Celera8122,225,172 - 122,293,224 (-)NCBICelera
Cytogenetic Map8q24.13NCBI
HuRef8121,360,288 - 121,427,855 (-)NCBIHuRef
CHM1_18126,077,126 - 126,144,676 (-)NCBICHM1_1
T2T-CHM13v2.08126,158,081 - 126,225,631 (-)NCBIT2T-CHM13v2.0
Washc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391559,203,712 - 59,246,043 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1559,203,846 - 59,246,016 (-)EnsemblGRCm39 Ensembl
GRCm381559,331,863 - 59,374,194 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1559,331,997 - 59,374,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv371559,163,552 - 59,205,707 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361559,161,678 - 59,203,833 (-)NCBIMGSCv36mm8
Celera1560,862,638 - 60,905,171 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1525.17NCBI
Washc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8792,773,625 - 92,825,532 (-)NCBIGRCr8
mRatBN7.2790,884,192 - 90,936,096 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl790,884,197 - 90,936,103 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx792,774,029 - 92,825,985 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0794,975,207 - 95,027,170 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0794,802,520 - 94,854,454 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0799,625,379 - 99,677,237 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl799,625,619 - 99,677,268 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07100,212,544 - 100,263,519 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4796,112,349 - 96,169,399 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera787,646,862 - 87,697,773 (-)NCBICelera
Cytogenetic Map7q33NCBI
WASHC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27142,447,027 - 142,514,855 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18117,958,154 - 118,026,003 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08121,710,118 - 121,777,977 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18124,461,424 - 124,529,262 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8124,461,424 - 124,529,262 (-)Ensemblpanpan1.1panPan2
WASHC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11323,019,422 - 23,078,073 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1323,019,636 - 23,078,280 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1322,983,619 - 23,042,271 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01323,361,232 - 23,419,922 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1323,361,234 - 23,419,935 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11323,081,984 - 23,140,611 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01323,191,178 - 23,249,843 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01323,434,176 - 23,492,905 (-)NCBIUU_Cfam_GSD_1.0
Washc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530315,241,282 - 15,299,433 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647022,667,127 - 22,725,749 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647022,667,354 - 22,725,538 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WASHC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl414,598,150 - 14,668,313 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1414,598,133 - 14,667,535 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2415,149,906 - 15,246,609 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WASHC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18119,612,921 - 119,679,058 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8119,611,210 - 119,668,885 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603920,495,821 - 20,567,260 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Washc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473530,166,623 - 30,223,404 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473530,166,617 - 30,223,404 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000002448   ⟹   ENSCLAP00000002397
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955461145,993 - 199,903 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000002449   ⟹   ENSCLAP00000002398
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955461146,230 - 199,903 (-)Ensembl
RefSeq Acc Id: XM_005397982   ⟹   XP_005398039
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955461145,993 - 199,273 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005397983   ⟹   XP_005398040
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955461145,993 - 199,273 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005397985   ⟹   XP_005398042
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955461145,993 - 199,062 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013521306   ⟹   XP_013376760
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955461145,993 - 199,274 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013521307   ⟹   XP_013376761
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955461145,993 - 199,273 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005398039   ⟸   XM_005397982
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YJ39 (UniProtKB/TrEMBL),   A0A8C2YJ34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005398040   ⟸   XM_005397983
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YJ39 (UniProtKB/TrEMBL),   A0A8C2YJ34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005398042   ⟸   XM_005397985
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YJ39 (UniProtKB/TrEMBL),   A0A8C2YJ34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013376760   ⟸   XM_013521306
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YJ34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013376761   ⟸   XM_013521307
- Peptide Label: isoform X3
- UniProtKB: A0A8C2YJ34 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000002398   ⟸   ENSCLAT00000002449
Ensembl Acc Id: ENSCLAP00000002397   ⟸   ENSCLAT00000002448


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001741 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000002448 ENTREZGENE
  ENSCLAT00000002448.1 UniProtKB/TrEMBL
  ENSCLAT00000002449 ENTREZGENE
  ENSCLAT00000002449.1 UniProtKB/TrEMBL
InterPro WASH_strumpellin UniProtKB/TrEMBL
NCBI Gene Kiaa0196 ENTREZGENE
PANTHER PTHR15691 UniProtKB/TrEMBL
  WASH COMPLEX SUBUNIT 5 UniProtKB/TrEMBL
Pfam Strumpellin UniProtKB/TrEMBL
UniProt A0A8C2YJ34 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YJ39 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-10-25 Washc5  WASH complex subunit 5  Kiaa0196  KIAA0196 ortholog  Symbol and/or name change 5135510 APPROVED