Lipj (lipase family member J) - Rat Genome Database

Name: Lipj
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Lipj (lipase family member J) Chinchilla lanigera

Analyze

Symbol:

Lipj

Name:

lipase family member J

RGD ID:

8782306

Description:

ASSOCIATED WITH end stage renal disease (ortholog); genetic disease (ortholog); PTEN hamartoma tumor syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

lipase member J; lipase, family member J

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LIPJ (lipase family member J)	NCBI	Ortholog
Rattus norvegicus (Norway rat):	Lipj (lipase family member J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LIPJ (lipase family member J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LIPJ (lipase family member J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lipj (lipase family member J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LIPJ (lipase family member J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	4,337,718 - 4,365,841 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955425	4,337,718 - 4,368,577 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

end stage renal disease (ISO)

genetic disease (ISO)

PTEN hamartoma tumor syndrome (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Lipj
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	4,337,718 - 4,365,841 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955425	4,337,718 - 4,368,577 (-)	NCBI	ChiLan1.0	ChiLan1.0

LIPJ
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	88,582,907 - 88,623,184 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	88,586,753 - 88,606,976 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	90,342,664 - 90,366,733 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	90,336,499 - 90,356,712 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	10	84,093,334 - 84,113,548 (+)	NCBI		Celera
Cytogenetic Map	10	q23.31	NCBI
HuRef	10	83,981,090 - 84,001,299 (+)	NCBI		HuRef
CHM1_1	10	90,628,595 - 90,648,809 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	89,466,981 - 89,507,284 (+)	NCBI		T2T-CHM13v2.0

Lipj
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	240,776,650 - 240,789,997 (-)	NCBI		GRCr8
mRatBN7.2	1	231,363,526 - 231,376,784 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	231,363,646 - 231,376,784 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	252,154,610 - 252,167,791 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	252,154,616 - 252,167,752 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	259,377,521 - 259,390,575 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	237,694,841 - 237,708,819 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	228,477,188 - 228,490,290 (-)	NCBI		Celera
Cytogenetic Map	1	q52	NCBI

LIPJ
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	100,596,654 - 100,624,400 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	100,601,969 - 100,629,715 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	85,307,536 - 85,330,911 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	88,816,492 - 88,832,860 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	88,816,492 - 88,832,860 (+)	Ensembl	panpan1.1		panPan2

LIPJ
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	38,419,821 - 38,441,234 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	38,424,721 - 38,588,175 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	38,232,759 - 38,258,116 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	40,004,034 - 40,025,430 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	26	37,840,192 - 37,865,672 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	37,435,626 - 37,460,870 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	38,705,616 - 38,730,906 (+)	NCBI		UU_Cfam_GSD_1.0

Lipj
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	78,139,052 - 78,159,785 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936735	633,135 - 654,218 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIPJ
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	82,032,074 - 82,052,232 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	82,035,967 - 82,052,166 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	42,709,571 - 42,729,649 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005385874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005385875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013514896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013514897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013514898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013514899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013514900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01025312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01225245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000013188 ⟹ ENSCLAP00000013037

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955425	4,337,718 - 4,365,841 (-)	Ensembl

RefSeq Acc Id:

ENSCLAT00000013189 ⟹ ENSCLAP00000013038

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955425	4,337,724 - 4,365,841 (-)	Ensembl

RefSeq Acc Id:

XM_005385874 ⟹ XP_005385931

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955425	4,337,718 - 4,365,818 (-)	NCBI

Sequence:

show sequence

AGAGACTGTGCAGGTTTACTGCCCAGAAGGTACACAAGAATTTGAGCATAACATATCAGGAGAT
CCTAAATGTGGTGCCTTTTCCTGGTGATATATTTCTTCCTAATTCTTGGAAATATTCATGGTGC
CTTTGGACATCAGAATCCTGAAGCAAATATGAATATTAGCCAAATAATTTCCTACTGGGGATAC
CCTGATGAAGAGTATAACATTGTAACTGAAGATGGCTATATCCTTTGCCTTTATAGAATTCCTT
ATGGGAAGACAAACAATAATAATTCAGCAAGGAGGCTTGTTGTGTACTTGCAACATGGTTTGCT
TTCATCTGCCAGCAACTGGGTTTCCAATCTTCCCAACAATAGCCTGGGCTTCATCCTGGCAGAC
GCTGGTTATGATGTGTGGATGGGGAACAGCAGAGGAAACACCTGGTCCCGGAAACATATGTACC
TACAAACGGATTCCCAAGAATTTTGGGCTTTCAGTTTTGATGAGATGGCTAAATATGACCTCCC
AGCTTCAATTGATTTCATTGTGAAGCGAACTGGACAAGAAGAAATATTTTATATAGGACATTCA
CAGGGTACTACTATTGCTTTCATAGCATTTTCTACAATACCGAAGATAGCTAAAAGAATTAAAG
TATTTTTTGCCTTAGCACCAGTTTTTTCTGTTGCACACACAAAAAGCCCTTTAATTAAAATGGC
ATACACATTGAAGTCAATAATCAAGGCTTTTTCTGGCAATAAAGACTTTCTACCTAAAACTTCA
TTTAACAATTTTATTGGTTCAAACTTCTGTTCATTACATAGTTTTGATCAAATTTGCCTCCGCA
CTTTGTTTATGATGTTTGGATATGACCCAGAGAACTTAAATATGAGTCGTTTGGATGTTTATTT
TTCACATAACCCATCAGGAACATCTGTTCAAAATATGGTCCACTGGAGTCAGCTTCTGTATTCT
ACTCACTTGAAAGCTTTTGACTGGGGCAGTCCTCATCTTAACTTGGCTCATTTTAATCAGACAA
CTTCTCCATCCTACAGCATAGCAGGTATGAATGTGCCAACTGCAACTTGGAATGGGGAAAGGGA
CTTGTTGGCTGATCCTGAAGATGTGAAAATCTTACAATCCCAAATCACCAAACTCATTTACCAA
AAGACTATTTCTTACTATAATCATATAGACTTTTTATTTGGATTAGATGTCTATTATCAAGTTT
ATCGTGAAATAATTGATATTATTCAAGACAATCTGTAGAGAACCATGGTACTGTCTGTGTACAG
ACCTGTGCTATTTCTATGAAAATTCCAATGGCTTTGTAAGTTTTCTCACATATTTAAATAACTA
TGTAAATTTTCTCACATATTTAAATAAAGTATTCAACAAAGTAA

hide sequence

RefSeq Acc Id:

XM_005385875 ⟹ XP_005385932

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955425	4,337,718 - 4,365,819 (-)	NCBI

Sequence:

show sequence

CAGAGACTGTGCAGGTTTACTGCCCAGAAGGTACACAAGAATTTGAGCATAACATATCAGGAGG
TAATTTAGTTGGATCCTAAATGTGGTGCCTTTTCCTGGTGATATATTTCTTCCTAATTCTTGGA
AATATTCATGGTGCCTTTGGACATCAGAATCCTGAAGCAAATATGAATATTAGCCAAATAATTT
CCTACTGGGGATACCCTGATGAAGAGTATAACATTGTAACTGAAGATGGCTATATCCTTTGCCT
TTATAGAATTCCTTATGGGAAGACAAACAATAATAATTCAGCAAGGAGGCTTGTTGTGTACTTG
CAACATGGTTTGCTTTCATCTGCCAGCAACTGGGTTTCCAATCTTCCCAACAATAGCCTGGGCT
TCATCCTGGCAGACGCTGGTTATGATGTGTGGATGGGGAACAGCAGAGGAAACACCTGGTCCCG
GAAACATATGTACCTACAAACGGATTCCCAAGAATTTTGGGCTTTCAGTTTTGATGAGATGGCT
AAATATGACCTCCCAGCTTCAATTGATTTCATTGTGAAGCGAACTGGACAAGAAGAAATATTTT
ATATAGGACATTCACAGGGTACTACTATTGCTTTCATAGCATTTTCTACAATACCGAAGATAGC
TAAAAGAATTAAAGTATTTTTTGCCTTAGCACCAGTTTTTTCTGTTGCACACACAAAAAGCCCT
TTAATTAAAATGGCATACACATTGAAGTCAATAATCAAGGCTTTTTCTGGCAATAAAGACTTTC
TACCTAAAACTTCATTTAACAATTTTATTGGTTCAAACTTCTGTTCATTACATAGTTTTGATCA
AATTTGCCTCCGCACTTTGTTTATGATGTTTGGATATGACCCAGAGAACTTAAATATGAGTCGT
TTGGATGTTTATTTTTCACATAACCCATCAGGAACATCTGTTCAAAATATGGTCCACTGGAGTC
AGCTTCTGTATTCTACTCACTTGAAAGCTTTTGACTGGGGCAGTCCTCATCTTAACTTGGCTCA
TTTTAATCAGACAACTTCTCCATCCTACAGCATAGCAGGTATGAATGTGCCAACTGCAACTTGG
AATGGGGAAAGGGACTTGTTGGCTGATCCTGAAGATGTGAAAATCTTACAATCCCAAATCACCA
AACTCATTTACCAAAAGACTATTTCTTACTATAATCATATAGACTTTTTATTTGGATTAGATGT
CTATTATCAAGTTTATCGTGAAATAATTGATATTATTCAAGACAATCTGTAGAGAACCATGGTA
CTGTCTGTGTACAGACCTGTGCTATTTCTATGAAAATTCCAATGGCTTTGTAAGTTTTCTCACA
TATTTAAATAACTATGTAAATTTTCTCACATATTTAAATAAAGTATTCAACAAAGTAA

hide sequence

RefSeq Acc Id:

XM_013514896 ⟹ XP_013370350

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955425	4,337,718 - 4,368,577 (-)	NCBI

Sequence:

show sequence

TGCAACCTCATGCCTCATCCCCCCAGAGTGCTGGGATTACAGATCCTAAATGTGGTGCCTTTTC
CTGGTGATATATTTCTTCCTAATTCTTGGAAATATTCATGGTGCCTTTGGACATCAGAATCCTG
AAGCAAATATGAATATTAGCCAAATAATTTCCTACTGGGGATACCCTGATGAAGAGTATAACAT
TGTAACTGAAGATGGCTATATCCTTTGCCTTTATAGAATTCCTTATGGGAAGACAAACAATAAT
AATTCAGCAAGGAGGCTTGTTGTGTACTTGCAACATGGTTTGCTTTCATCTGCCAGCAACTGGG
TTTCCAATCTTCCCAACAATAGCCTGGGCTTCATCCTGGCAGACGCTGGTTATGATGTGTGGAT
GGGGAACAGCAGAGGAAACACCTGGTCCCGGAAACATATGTACCTACAAACGGATTCCCAAGAA
TTTTGGGCTTTCAGTTTTGATGAGATGGCTAAATATGACCTCCCAGCTTCAATTGATTTCATTG
TGAAGCGAACTGGACAAGAAGAAATATTTTATATAGGACATTCACAGGGTACTACTATTGCTTT
CATAGCATTTTCTACAATACCGAAGATAGCTAAAAGAATTAAAGTATTTTTTGCCTTAGCACCA
GTTTTTTCTGTTGCACACACAAAAAGCCCTTTAATTAAAATGGCATACACATTGAAGTCAATAA
TCAAGGCTTTTTCTGGCAATAAAGACTTTCTACCTAAAACTTCATTTAACAATTTTATTGGTTC
AAACTTCTGTTCATTACATAGTTTTGATCAAATTTGCCTCCGCACTTTGTTTATGATGTTTGGA
TATGACCCAGAGAACTTAAATATGAGTCGTTTGGATGTTTATTTTTCACATAACCCATCAGGAA
CATCTGTTCAAAATATGGTCCACTGGAGTCAGCTTCTGTATTCTACTCACTTGAAAGCTTTTGA
CTGGGGCAGTCCTCATCTTAACTTGGCTCATTTTAATCAGACAACTTCTCCATCCTACAGCATA
GCAGGTATGAATGTGCCAACTGCAACTTGGAATGGGGAAAGGGACTTGTTGGCTGATCCTGAAG
ATGTGAAAATCTTACAATCCCAAATCACCAAACTCATTTACCAAAAGACTATTTCTTACTATAA
TCATATAGACTTTTTATTTGGATTAGATGTCTATTATCAAGTTTATCGTGAAATAATTGATATT
ATTCAAGACAATCTGTAGAGAACCATGGTACTGTCTGTGTACAGACCTGTGCTATTTCTATGAA
AATTCCAATGGCTTTGTAAGTTTTCTCACATATTTAAATAACTATGTAAATTTTCTCACATATT
TAAATAAAGTATTCAACAAAGTAA

hide sequence

RefSeq Acc Id:

XM_013514897 ⟹ XP_013370351

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955425	4,337,718 - 4,365,819 (-)	NCBI

Sequence:

show sequence

CAGAGACTGTGCAGGTTTACTGCCCAGAAGGTACACAAGAATTTGAGCATAACATATCAGGAGG
TAATTTAGTTGGATCCTAAATGTGGTGCCTTTTCCTGGTGATATATTTCTTCCTAATTCTTGGA
AATATTCATGGTGCCTTTGGACATCAGAATCCTGAAGCAAATATGAATATTAGCCAAATAATTT
CCTACTGGGGATACCCTGATGAAGAGTATAACATTGTAACTGAAGATGGCTATATCCTTTGCCT
TTATAGAATTCCTTATGGGAAGACAAACAATAATAATTCAGCAAGGAGGCTTGTTGTGTACTTG
CAACATGGTTTGCTTTCATCTGCCAGCAACTGGGTTTCCAATCTTCCCAACAATAGCCTGGGCT
TCATCCTGGCAGACGCTGGTTATGATGTGTGGATGGGGAACAGCAGAGGAAACACCTGGTCCCG
GAAACATATGTACCTACAAACGGATTCCCAAGAATTTTGGGCTTTCAGTTTTGATGAGATGGCT
AAATATGACCTCCCAGCTTCAATTGATTTCATTGTGAAGCGAACTGGACAAGAAGAAATATTTT
ATATAGGACATTCACAGGGTACTACTATTGCTTTCATAGCATTTTCTACAATACCGAAGATAGC
TAAAAGAATTAAAGTATTTTTTGCCTTAGCACCAGTTTTTTCTGTTGCACACACAAAAAGCCCT
TTAATTAAAATGGCATACACATTGAAGTCAATAATCAAGGCTTTTTCTGGCAATAAAGACTTTC
TACCTAAAACTTCATTTAACAATTTTATTGGTTCAAACTTCTGTTCATTACATAGTTTTGATCA
AATTTGCCTCCGCACTTTGTTTATGATGTTTGGATATGACCCAGAGAACTTAAATATGAGTCGT
TTGGATGTTTATTTTTCACATAACCCATCAGGAACATCTGTTCAAAATATGGTCCACTGGAGTC
AGACAACTTCTCCATCCTACAGCATAGCAGGTATGAATGTGCCAACTGCAACTTGGAATGGGGA
AAGGGACTTGTTGGCTGATCCTGAAGATGTGAAAATCTTACAATCCCAAATCACCAAACTCATT
TACCAAAAGACTATTTCTTACTATAATCATATAGACTTTTTATTTGGATTAGATGTCTATTATC
AAGTTTATCGTGAAATAATTGATATTATTCAAGACAATCTGTAGAGAACCATGGTACTGTCTGT
GTACAGACCTGTGCTATTTCTATGAAAATTCCAATGGCTTTGTAAGTTTTCTCACATATTTAAA
TAACTATGTAAATTTTCTCACATATTTAAATAAAGTATTCAACAAAGTAA

hide sequence

RefSeq Acc Id:

XM_013514898 ⟹ XP_013370352

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955425	4,337,718 - 4,365,819 (-)	NCBI

Sequence:

show sequence

CAGAGACTGTGCAGGTTTACTGCCCAGAAGGTACACAAGAATTTGAGCATAACATATCAGGAGG
TAATTTAGTTGGATCCTAAATGTGGTGCCTTTTCCTGGTGATATATTTCTTCCTAATTCTTGGA
AATATTCATGGTGCCTTTGGACATCAGAATCCTGAAGCAAATATGAATATTAGCCAAATAATTT
CCTACTGGGGATACCCTGATGAAGAGTATAACATTGTAACTGAAGATGGCTATATCCTTTGCCT
TTATAGAATTCCTTATGGGAAGACAAACAATAATAATTCAGACGCTGGTTATGATGTGTGGATG
GGGAACAGCAGAGGAAACACCTGGTCCCGGAAACATATGTACCTACAAACGGATTCCCAAGAAT
TTTGGGCTTTCAGTTTTGATGAGATGGCTAAATATGACCTCCCAGCTTCAATTGATTTCATTGT
GAAGCGAACTGGACAAGAAGAAATATTTTATATAGGACATTCACAGGGTACTACTATTGCTTTC
ATAGCATTTTCTACAATACCGAAGATAGCTAAAAGAATTAAAGTATTTTTTGCCTTAGCACCAG
TTTTTTCTGTTGCACACACAAAAAGCCCTTTAATTAAAATGGCATACACATTGAAGTCAATAAT
CAAGGCTTTTTCTGGCAATAAAGACTTTCTACCTAAAACTTCATTTAACAATTTTATTGGTTCA
AACTTCTGTTCATTACATAGTTTTGATCAAATTTGCCTCCGCACTTTGTTTATGATGTTTGGAT
ATGACCCAGAGAACTTAAATATGAGTCGTTTGGATGTTTATTTTTCACATAACCCATCAGGAAC
ATCTGTTCAAAATATGGTCCACTGGAGTCAGCTTCTGTATTCTACTCACTTGAAAGCTTTTGAC
TGGGGCAGTCCTCATCTTAACTTGGCTCATTTTAATCAGACAACTTCTCCATCCTACAGCATAG
CAGGTATGAATGTGCCAACTGCAACTTGGAATGGGGAAAGGGACTTGTTGGCTGATCCTGAAGA
TGTGAAAATCTTACAATCCCAAATCACCAAACTCATTTACCAAAAGACTATTTCTTACTATAAT
CATATAGACTTTTTATTTGGATTAGATGTCTATTATCAAGTTTATCGTGAAATAATTGATATTA
TTCAAGACAATCTGTAGAGAACCATGGTACTGTCTGTGTACAGACCTGTGCTATTTCTATGAAA
ATTCCAATGGCTTTGTAAGTTTTCTCACATATTTAAATAACTATGTAAATTTTCTCACATATTT
AAATAAAGTATTCAACAAAGTAA

hide sequence

RefSeq Acc Id:

XM_013514899 ⟹ XP_013370353

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955425	4,337,718 - 4,365,819 (-)	NCBI

Sequence:

show sequence

CAGAGACTGTGCAGGTTTACTGCCCAGAAGGTACACAAGAATTTGAGCATAACATATCAGGAGG
TAATTTAGTTGGATCCTAAATGTGGTGCCTTTTCCTGGTGATATATTTCTTCCTAATTCTTGGA
AATATTCATGGTGCCTTTGGACATCAGAATCCTGAAGCAAATATGAATATTAGCCAAATAATTT
CCTACTGGGGATACCCTGATGAAGAGTATAACATTGTAACTGAAGATGGCTATATCCTTTGCCT
TTATAGAATTCCTTATGGGAAGACAAACAATAATAATTCAGCAAGGAGGCTTGTTGTGTACTTG
CAACATGGTTTGCTTTCATCTGCCAGCAACTGGGTTTCCAATCTTCCCAACAATAGCCTGGGCT
TCATCCTGGCAGACGCTGGTTATGATGTGTGGATGGGGAACAGCAGAGGAAACACCTGGTCCCG
GAAACATATGTACCTACAAACGGATTCCCAAGAATTTTGGGCTTTCAGTTTTGATGAGATGGCT
AAATATGACCTCCCAGCTTCAATTGATTTCATTGTGAAGCGAACTGGACAAGAAGAAATATTTT
ATATAGGACATTCACAGGGTACTACTATTGCTTTCATAGCATTTTCTACAATACCGAAGATAGC
TAAAAGAATTAAAGTATTTTTTGCCTTAGCACCAGTTTTTTCTGTTGCACACACAAAAAGCCCT
TTAATTAAAATGGCATACACATTGAAGTCAATAATCAAGAGTCGTTTGGATGTTTATTTTTCAC
ATAACCCATCAGGAACATCTGTTCAAAATATGGTCCACTGGAGTCAGCTTCTGTATTCTACTCA
CTTGAAAGCTTTTGACTGGGGCAGTCCTCATCTTAACTTGGCTCATTTTAATCAGACAACTTCT
CCATCCTACAGCATAGCAGGTATGAATGTGCCAACTGCAACTTGGAATGGGGAAAGGGACTTGT
TGGCTGATCCTGAAGATGTGAAAATCTTACAATCCCAAATCACCAAACTCATTTACCAAAAGAC
TATTTCTTACTATAATCATATAGACTTTTTATTTGGATTAGATGTCTATTATCAAGTTTATCGT
GAAATAATTGATATTATTCAAGACAATCTGTAGAGAACCATGGTACTGTCTGTGTACAGACCTG
TGCTATTTCTATGAAAATTCCAATGGCTTTGTAAGTTTTCTCACATATTTAAATAACTATGTAA
ATTTTCTCACATATTTAAATAAAGTATTCAACAAAGTAA

hide sequence

RefSeq Acc Id:

XM_013514900 ⟹ XP_013370354

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955425	4,337,718 - 4,365,819 (-)	NCBI

Sequence:

show sequence

CAGAGACTGTGCAGGTTTACTGCCCAGAAGGTACACAAGAATTTGAGCATAACATATCAGGAGG
TAATTTAGTTGGATCCTAAATGTGGTGCCTTTTCCTGGTGATATATTTCTTCCTAATTCTTGGA
AATATTCATGGTGCCTTTGGACATCAGAATCCTGAAGCAAATATGAATATTAGCCAAATAATTT
CCTACTGGGGATACCCTGATGAAGAGTATAACATTGTAACTGAAGATGGCTATATCCTTTGCCT
TTATAGAATTCCTTATGGGAAGACAAACAATAATAATTCAGCAAGGAGGCTTGTTGTGTACTTG
CAACATGGTTTGCTTTCATCTGCCAGCAACTGGGTTTCCAATCTTCCCAACAATAGCCTGGGCT
TCATCCTGGCAGACGCTGGTTATGATGTGTGGATGGGGAACAGCAGAGGAAACACCTGGTCCCG
GAAACATATGTACCTACAAACGGATTCCCAAGAATTTTGGGCTTTCAGTTTTGATGAGATGGCT
AAATATGACCTCCCAGCTTCAATTGATTTCATTGTGAAGCGAACTGGACAAGAAGAAATATTTT
ATATAGGACATTCACAGGGTACTACTATTGCTTTCATAGCATTTTCTACAATACCGAAGATAGC
TAAAAGAATTAAAGTATTTTTTGCCTTAGCACCAGTTTTTTCTGTTGCACACACAAAAAGCCCT
TTAATTAAAATGGCATACACATTGAAGTCAATAATCAAGAGTCGTTTGGATGTTTATTTTTCAC
ATAACCCATCAGGAACATCTGTTCAAAATATGGTCCACTGGAGTCAGACAACTTCTCCATCCTA
CAGCATAGCAGGTATGAATGTGCCAACTGCAACTTGGAATGGGGAAAGGGACTTGTTGGCTGAT
CCTGAAGATGTGAAAATCTTACAATCCCAAATCACCAAACTCATTTACCAAAAGACTATTTCTT
ACTATAATCATATAGACTTTTTATTTGGATTAGATGTCTATTATCAAGTTTATCGTGAAATAAT
TGATATTATTCAAGACAATCTGTAGAGAACCATGGTACTGTCTGTGTACAGACCTGTGCTATTT
CTATGAAAATTCCAATGGCTTTGTAAGTTTTCTCACATATTTAAATAACTATGTAAATTTTCTC
ACATATTTAAATAAAGTATTCAACAAAGTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005385931	(Get FASTA)	NCBI Sequence Viewer
	XP_005385932	(Get FASTA)	NCBI Sequence Viewer
	XP_013370350	(Get FASTA)	NCBI Sequence Viewer
	XP_013370351	(Get FASTA)	NCBI Sequence Viewer
	XP_013370352	(Get FASTA)	NCBI Sequence Viewer
	XP_013370353	(Get FASTA)	NCBI Sequence Viewer
	XP_013370354	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000013037
	ENSCLAP00000013037.1
	ENSCLAP00000013038
	ENSCLAP00000013038.1

RefSeq Acc Id:	XP_005385931 ⟸ XM_005385874
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VCX2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWCLFLVIYFFLILGNIHGAFGHQNPEANMNISQIISYWGYPDEEYNIVTEDGYILCLYRIPYG KTNNNNSARRLVVYLQHGLLSSASNWVSNLPNNSLGFILADAGYDVWMGNSRGNTWSRKHMYLQ TDSQEFWAFSFDEMAKYDLPASIDFIVKRTGQEEIFYIGHSQGTTIAFIAFSTIPKIAKRIKVF FALAPVFSVAHTKSPLIKMAYTLKSIIKAFSGNKDFLPKTSFNNFIGSNFCSLHSFDQICLRTL FMMFGYDPENLNMSRLDVYFSHNPSGTSVQNMVHWSQLLYSTHLKAFDWGSPHLNLAHFNQTTS PSYSIAGMNVPTATWNGERDLLADPEDVKILQSQITKLIYQKTISYYNHIDFLFGLDVYYQVYR EIIDIIQDNL hide sequence

RefSeq Acc Id:	XP_005385932 ⟸ XM_005385875
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VCX2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWCLFLVIYFFLILGNIHGAFGHQNPEANMNISQIISYWGYPDEEYNIVTEDGYILCLYRIPYG KTNNNNSARRLVVYLQHGLLSSASNWVSNLPNNSLGFILADAGYDVWMGNSRGNTWSRKHMYLQ TDSQEFWAFSFDEMAKYDLPASIDFIVKRTGQEEIFYIGHSQGTTIAFIAFSTIPKIAKRIKVF FALAPVFSVAHTKSPLIKMAYTLKSIIKAFSGNKDFLPKTSFNNFIGSNFCSLHSFDQICLRTL FMMFGYDPENLNMSRLDVYFSHNPSGTSVQNMVHWSQLLYSTHLKAFDWGSPHLNLAHFNQTTS PSYSIAGMNVPTATWNGERDLLADPEDVKILQSQITKLIYQKTISYYNHIDFLFGLDVYYQVYR EIIDIIQDNL hide sequence

RefSeq Acc Id:	XP_013370350 ⟸ XM_013514896
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VCX2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWCLFLVIYFFLILGNIHGAFGHQNPEANMNISQIISYWGYPDEEYNIVTEDGYILCLYRIPYG KTNNNNSARRLVVYLQHGLLSSASNWVSNLPNNSLGFILADAGYDVWMGNSRGNTWSRKHMYLQ TDSQEFWAFSFDEMAKYDLPASIDFIVKRTGQEEIFYIGHSQGTTIAFIAFSTIPKIAKRIKVF FALAPVFSVAHTKSPLIKMAYTLKSIIKAFSGNKDFLPKTSFNNFIGSNFCSLHSFDQICLRTL FMMFGYDPENLNMSRLDVYFSHNPSGTSVQNMVHWSQLLYSTHLKAFDWGSPHLNLAHFNQTTS PSYSIAGMNVPTATWNGERDLLADPEDVKILQSQITKLIYQKTISYYNHIDFLFGLDVYYQVYR EIIDIIQDNL hide sequence

RefSeq Acc Id:	XP_013370352 ⟸ XM_013514898
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2VCX2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWCLFLVIYFFLILGNIHGAFGHQNPEANMNISQIISYWGYPDEEYNIVTEDGYILCLYRIPYG KTNNNNSDAGYDVWMGNSRGNTWSRKHMYLQTDSQEFWAFSFDEMAKYDLPASIDFIVKRTGQE EIFYIGHSQGTTIAFIAFSTIPKIAKRIKVFFALAPVFSVAHTKSPLIKMAYTLKSIIKAFSGN KDFLPKTSFNNFIGSNFCSLHSFDQICLRTLFMMFGYDPENLNMSRLDVYFSHNPSGTSVQNMV HWSQLLYSTHLKAFDWGSPHLNLAHFNQTTSPSYSIAGMNVPTATWNGERDLLADPEDVKILQS QITKLIYQKTISYYNHIDFLFGLDVYYQVYREIIDIIQDNL hide sequence

RefSeq Acc Id:	XP_013370354 ⟸ XM_013514900
- Peptide Label:	isoform X5
- UniProtKB:	A0A8C2VCX2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWCLFLVIYFFLILGNIHGAFGHQNPEANMNISQIISYWGYPDEEYNIVTEDGYILCLYRIPYG KTNNNNSARRLVVYLQHGLLSSASNWVSNLPNNSLGFILADAGYDVWMGNSRGNTWSRKHMYLQ TDSQEFWAFSFDEMAKYDLPASIDFIVKRTGQEEIFYIGHSQGTTIAFIAFSTIPKIAKRIKVF FALAPVFSVAHTKSPLIKMAYTLKSIIKSRLDVYFSHNPSGTSVQNMVHWSQTTSPSYSIAGMN VPTATWNGERDLLADPEDVKILQSQITKLIYQKTISYYNHIDFLFGLDVYYQVYREIIDIIQDN L hide sequence

RefSeq Acc Id:	XP_013370353 ⟸ XM_013514899
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C2VCX2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWCLFLVIYFFLILGNIHGAFGHQNPEANMNISQIISYWGYPDEEYNIVTEDGYILCLYRIPYG KTNNNNSARRLVVYLQHGLLSSASNWVSNLPNNSLGFILADAGYDVWMGNSRGNTWSRKHMYLQ TDSQEFWAFSFDEMAKYDLPASIDFIVKRTGQEEIFYIGHSQGTTIAFIAFSTIPKIAKRIKVF FALAPVFSVAHTKSPLIKMAYTLKSIIKSRLDVYFSHNPSGTSVQNMVHWSQLLYSTHLKAFDW GSPHLNLAHFNQTTSPSYSIAGMNVPTATWNGERDLLADPEDVKILQSQITKLIYQKTISYYNH IDFLFGLDVYYQVYREIIDIIQDNL hide sequence

RefSeq Acc Id:	XP_013370351 ⟸ XM_013514897
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VEY4 (UniProtKB/TrEMBL), A0A8C2VCX2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWCLFLVIYFFLILGNIHGAFGHQNPEANMNISQIISYWGYPDEEYNIVTEDGYILCLYRIPYG KTNNNNSARRLVVYLQHGLLSSASNWVSNLPNNSLGFILADAGYDVWMGNSRGNTWSRKHMYLQ TDSQEFWAFSFDEMAKYDLPASIDFIVKRTGQEEIFYIGHSQGTTIAFIAFSTIPKIAKRIKVF FALAPVFSVAHTKSPLIKMAYTLKSIIKAFSGNKDFLPKTSFNNFIGSNFCSLHSFDQICLRTL FMMFGYDPENLNMSRLDVYFSHNPSGTSVQNMVHWSQTTSPSYSIAGMNVPTATWNGERDLLAD PEDVKILQSQITKLIYQKTISYYNHIDFLFGLDVYYQVYREIIDIIQDNL hide sequence

RefSeq Acc Id:

ENSCLAP00000013037 ⟸ ENSCLAT00000013188

RefSeq Acc Id:

ENSCLAP00000013038 ⟸ ENSCLAT00000013189

Protein Domains

Partial AB-hydrolase lipase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000008996	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000013188	ENTREZGENE
	ENSCLAT00000013188.1	UniProtKB/TrEMBL
	ENSCLAT00000013189	ENTREZGENE
	ENSCLAT00000013189.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.1820	UniProtKB/TrEMBL
InterPro	AB_hydrolase	UniProtKB/TrEMBL
	AB_hydrolase_lipase	UniProtKB/TrEMBL
	Lipase_euk	UniProtKB/TrEMBL
NCBI Gene	Lipj	ENTREZGENE
PANTHER	LIPASE MEMBER J	UniProtKB/TrEMBL
	LYSOSOMAL ACID LIPASE-RELATED	UniProtKB/TrEMBL
Pfam	Abhydro_lipase	UniProtKB/TrEMBL
PIRSF	Steryl_ester_lip	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53474	UniProtKB/TrEMBL
UniProt	A0A8C2VCX2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2VEY4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Lipj	lipase family member J		lipase, family member J	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar