Depp1 (DEPP autophagy regulator 1) - Rat Genome Database

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Gene: Depp1 (DEPP autophagy regulator 1) Chinchilla lanigera
Analyze
Symbol: Depp1
Name: DEPP autophagy regulator 1 (Ensembl:DEPP1 autophagy regulator)
RGD ID: 8781407
Description: INVOLVED IN regulation of autophagy (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); COVID-19 (ortholog); endometriosis (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown open reading frame, human C10orf10; DEPP1 autophagy regulator; DEPP1, autophagy regulator; LOC102013551
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555462,291,829 - 2,293,375 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555462,291,829 - 2,293,375 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Depp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555462,291,829 - 2,293,375 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555462,291,829 - 2,293,375 (-)NCBIChiLan1.0ChiLan1.0
DEPP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381044,976,128 - 44,978,809 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1044,970,981 - 44,978,809 (-)EnsemblGRCh38hg38GRCh38
GRCh371045,471,576 - 45,474,257 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361044,791,715 - 44,794,336 (-)NCBINCBI36Build 36hg18NCBI36
Build 341044,791,716 - 44,794,263NCBI
Celera1041,474,883 - 41,477,504 (-)NCBICelera
Cytogenetic Map10q11.21NCBI
HuRef1041,996,250 - 41,998,871 (-)NCBIHuRef
CHM1_11045,510,686 - 45,513,307 (-)NCBICHM1_1
T2T-CHM13v2.01045,857,092 - 45,859,773 (-)NCBIT2T-CHM13v2.0
Depp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396116,627,645 - 116,629,808 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6116,627,570 - 116,629,755 (+)EnsemblGRCm39 Ensembl
GRCm386116,650,684 - 116,652,847 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6116,650,609 - 116,652,794 (+)EnsemblGRCm38mm10GRCm38
MGSCv376116,600,702 - 116,602,865 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366116,616,318 - 116,618,413 (+)NCBIMGSCv36mm8
Celera6118,491,933 - 118,494,097 (+)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.83NCBI
Depp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84151,583,105 - 151,585,455 (+)NCBIGRCr8
mRatBN7.24149,910,794 - 149,913,013 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4149,910,779 - 149,914,542 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4156,152,814 - 156,154,892 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04151,936,856 - 151,938,934 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04150,559,748 - 150,561,826 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04148,780,330 - 148,784,566 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4148,782,479 - 148,784,562 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04214,721,136 - 214,723,301 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44153,000,782 - 153,002,562 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4138,786,484 - 138,788,568 (+)NCBICelera
Cytogenetic Map4q42NCBI
DEPP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2857,712,084 - 57,713,637 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11057,717,413 - 57,718,929 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01041,970,914 - 41,973,518 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11045,150,510 - 45,153,157 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1045,151,636 - 45,152,280 (-)Ensemblpanpan1.1panPan2
DEPP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1282,463,770 - 2,465,240 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl282,464,584 - 2,465,210 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha282,699,175 - 2,700,647 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0282,642,640 - 2,644,112 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl282,643,452 - 2,644,078 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1282,441,206 - 2,442,678 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0282,478,478 - 2,479,950 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0282,609,647 - 2,611,119 (+)NCBIUU_Cfam_GSD_1.0
Depp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721382,041,955 - 82,043,912 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366174,740,103 - 4,740,741 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366174,740,073 - 4,743,610 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DEPP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1491,114,441 - 91,122,191 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11491,118,332 - 91,120,242 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21499,353,238 - 99,354,838 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DEPP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1940,602,193 - 40,603,791 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl940,602,223 - 40,602,861 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605645,800,538 - 45,802,078 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Depp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004628729538 - 1,142 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000002338   ⟹   ENSCLAP00000002289
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555462,291,829 - 2,293,375 (-)Ensembl
RefSeq Acc Id: XM_005411783   ⟹   XP_005411840
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555462,291,829 - 2,293,375 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005411840 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000002289
  ENSCLAP00000002289.1
Reference Protein Sequences
RefSeq Acc Id: XP_005411840   ⟸   XM_005411783
- UniProtKB: A0A8C2YJ17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000002289   ⟸   ENSCLAT00000002338


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001656 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000002338 ENTREZGENE
  ENSCLAT00000002338.1 UniProtKB/TrEMBL
InterPro DEPP UniProtKB/TrEMBL
NCBI Gene LOC102013551 ENTREZGENE
PANTHER PROTEIN DEPP1 UniProtKB/TrEMBL
  PTHR15426 UniProtKB/TrEMBL
Pfam DEPP UniProtKB/TrEMBL
UniProt A0A8C2YJ17 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-09-07 Depp1  DEPP autophagy regulator 1  Depp1  DEPP1 autophagy regulator  Symbol and/or name change 5135510 APPROVED
2019-01-29 Depp1  DEPP1 autophagy regulator    DEPP1, autophagy regulator  Symbol and/or name change 5135510 APPROVED
2017-11-07 Depp1  DEPP1, autophagy regulator  LOC102013551  chromosome unknown open reading frame, human C10orf10  Symbol and/or name change 5135510 APPROVED