Dpm2 (dolichyl-phosphate mannosyltransferase subunit 2, regulatory) - Rat Genome Database

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Gene: Dpm2 (dolichyl-phosphate mannosyltransferase subunit 2, regulatory) Chinchilla lanigera
Analyze
Symbol: Dpm2
Name: dolichyl-phosphate mannosyltransferase subunit 2, regulatory
RGD ID: 8780958
Description: ENCODES a protein that exhibits dolichyl-phosphate beta-D-mannosyltransferase activity (ortholog); enzyme activator activity (ortholog); enzyme regulator activity (ortholog); INVOLVED IN dolichol metabolic process (ortholog); GPI anchor biosynthetic process (ortholog); regulation of protein stability (ortholog); ASSOCIATED WITH congenital disorder of glycosylation Iu (ortholog); developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); FOUND IN dolichol-phosphate-mannose synthase complex (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955419740,815 - 743,036 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955419740,815 - 743,036 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dpm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955419740,815 - 743,036 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955419740,815 - 743,036 (+)NCBIChiLan1.0ChiLan1.0
DPM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389127,935,099 - 127,937,854 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9127,935,099 - 127,937,854 (-)EnsemblGRCh38hg38GRCh38
GRCh379130,697,378 - 130,700,133 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369129,737,203 - 129,739,956 (-)NCBINCBI36Build 36hg18NCBI36
Build 349127,776,935 - 127,779,689NCBI
Celera9101,348,597 - 101,351,986 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,314,315 - 100,317,704 (-)NCBIHuRef
CHM1_19130,849,673 - 130,853,062 (-)NCBICHM1_1
T2T-CHM13v2.09140,142,875 - 140,145,630 (-)NCBIT2T-CHM13v2.0
Dpm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,460,870 - 32,463,583 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,460,870 - 32,463,591 (+)EnsemblGRCm39 Ensembl
GRCm38232,570,858 - 32,573,571 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,570,858 - 32,573,579 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,426,378 - 32,429,091 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36232,392,867 - 32,395,580 (+)NCBIMGSCv36mm8
Celera232,276,654 - 32,279,355 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
Dpm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,253,548 - 36,256,592 (+)NCBIGRCr8
mRatBN7.2315,855,952 - 15,858,867 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,856,182 - 15,869,165 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl315,856,182 - 15,869,165 (+)NCBImRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,924,614 - 18,927,514 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,509,621 - 27,512,521 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,760,361 - 25,763,278 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,587,941 - 11,590,528 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,587,941 - 11,590,528 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,938,350 - 16,940,937 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera310,596,003 - 10,598,592 (+)NCBICelera
RH 3.4 Map383.1RGD
Cytogenetic Map3p11NCBI
DPM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,415,475 - 11,418,327 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,415,399 - 11,420,675 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,055,271 - 99,058,058 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19127,725,783 - 127,729,589 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9127,725,780 - 127,729,589 (-)Ensemblpanpan1.1panPan2
DPM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,484,244 - 55,488,359 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,485,605 - 55,487,735 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,679,431 - 54,682,461 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,407,404 - 56,410,419 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,407,680 - 56,409,795 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1955,167,501 - 55,170,426 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,482,125 - 55,485,141 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,573,351 - 55,576,367 (+)NCBIUU_Cfam_GSD_1.0
Dpm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947195,796,624 - 195,801,080 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648715,565,176 - 15,567,881 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648715,565,151 - 15,567,856 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DPM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1268,418,445 - 268,423,552 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11268,420,273 - 268,423,557 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,342,022 - 302,345,311 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DPM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11210,184,087 - 10,187,463 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1210,185,040 - 10,187,279 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660796,031,269 - 6,034,645 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dpm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247607,638,437 - 7,640,810 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247607,638,497 - 7,640,810 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011831   ⟹   ENSCLAP00000011693
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955419740,815 - 743,036 (+)Ensembl
RefSeq Acc Id: XM_005382389   ⟹   XP_005382446
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955419740,815 - 743,036 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013513156   ⟹   XP_013368610
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955419740,815 - 742,473 (+)NCBI
Sequence:
RefSeq Acc Id: XR_260596
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955419740,815 - 742,565 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005382446 (Get FASTA)   NCBI Sequence Viewer  
  XP_013368610 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011693.1
Reference Protein Sequences
RefSeq Acc Id: XP_005382446   ⟸   XM_005382389
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013368610   ⟸   XM_013513156
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000011693   ⟸   ENSCLAT00000011831


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008064 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011831.1 UniProtKB/TrEMBL
InterPro DPM2 UniProtKB/TrEMBL
NCBI Gene Dpm2 ENTREZGENE
PANTHER DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY PROTEIN UniProtKB/TrEMBL
  PTHR15039 UniProtKB/TrEMBL
Pfam DPM2 UniProtKB/TrEMBL
UniProt A0A8C2VBS1_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Dpm2  dolichyl-phosphate mannosyltransferase subunit 2, regulatory    dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit  Symbol and/or name change 5135510 APPROVED