Mrpl54 (mitochondrial ribosomal protein L54)

Gene: Mrpl54 (mitochondrial ribosomal protein L54) Chinchilla lanigera

Analyze

Symbol:

Mrpl54

Name:

mitochondrial ribosomal protein L54

RGD ID:

8779879

Description:

ASSOCIATED WITH amenorrhea (ortholog); genetic disease (ortholog); FOUND IN mitochondrial large ribosomal subunit (ortholog); mitochondrion (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

39S ribosomal protein L54, mitochondrial

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	5,655,560 - 5,657,699 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	5,655,510 - 5,659,103 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amenorrhea (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

mitochondrial large ribosomal subunit (ISO)

mitochondrion (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Mrpl54
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	5,655,560 - 5,657,699 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	5,655,510 - 5,659,103 (+)	NCBI	ChiLan1.0	ChiLan1.0

MRPL54
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	3,762,682 - 3,767,565 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	3,762,682 - 3,768,575 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	3,762,680 - 3,767,563 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	3,713,665 - 3,718,563 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	3,713,671 - 3,718,555	NCBI
Celera	19	3,700,310 - 3,705,207 (+)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	3,527,380 - 3,532,329 (+)	NCBI		HuRef
CHM1_1	19	3,762,292 - 3,767,188 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	3,741,934 - 3,746,816 (+)	NCBI		T2T-CHM13v2.0

Mrpl54
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	81,100,556 - 81,102,760 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	81,100,547 - 81,102,768 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	81,264,722 - 81,266,926 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	81,264,713 - 81,266,934 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	80,727,467 - 80,729,671 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	80,667,851 - 80,670,055 (-)	NCBI		MGSCv36	mm8
Celera	10	82,285,070 - 82,287,274 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Mrpl54
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	9,103,525 - 9,106,045 (+)	NCBI		GRCr8
mRatBN7.2	7	8,452,801 - 8,455,321 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	8,452,716 - 8,455,321 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	11,337,148 - 11,339,518 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	13,212,631 - 13,215,001 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	11,080,199 - 11,082,469 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	11,321,057 - 11,323,577 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	11,321,057 - 11,323,577 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	11,488,465 - 11,490,985 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	9,936,603 - 9,939,123 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	9,936,616 - 9,939,119 (+)	NCBI
Celera	7	6,641,125 - 6,643,645 (+)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

MRPL54
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	8,158,376 - 8,163,105 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	7,390,025 - 7,394,734 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	2,786,348 - 2,791,063 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	3,735,103 - 3,739,571 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	3,735,103 - 3,739,571 (+)	Ensembl	panpan1.1		panPan2

MRPL54
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	55,709,341 - 55,712,729 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	55,710,281 - 55,712,268 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	55,434,730 - 55,438,201 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	56,369,463 - 56,372,935 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	56,369,522 - 56,372,925 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	55,425,304 - 55,428,772 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	55,907,308 - 55,910,765 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	56,106,043 - 56,109,520 (-)	NCBI		UU_Cfam_GSD_1.0

Mrpl54
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	215,701,434 - 215,703,492 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	2,131,286 - 2,133,341 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	2,131,291 - 2,133,349 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPL54
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	74,925,070 - 74,928,167 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	74,925,064 - 74,928,196 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	75,516,538 - 75,519,665 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPL54
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	3,518,333 - 3,523,178 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	3,518,028 - 3,523,186 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	4,726,814 - 4,731,747 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrpl54
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	6,406,083 - 6,409,326 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	6,405,998 - 6,409,721 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005405885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01062019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01156263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000011602 ⟹ ENSCLAP00000011465

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955495	5,655,560 - 5,657,699 (+)	Ensembl

RefSeq Acc Id:

XM_005405885 ⟹ XP_005405942

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955495	5,655,510 - 5,659,103 (+)	NCBI

Sequence:

show sequence

GTGACGTCTCTCTCCCGGAAACGTGCGCGTGCAAGCAGTCGACAAACGTCATGGCGGCCAGACG
CCTCTATATGGCTACCCGTACGTGGGGTGCCTGGGATCCCCGGGACCTCTCAGACCGCGTCGCC
ACTGGAAGATTCTTGGTTCGAGCTTATGCCAAGAAGCCAGTCATGAAGGGATTCAAGGGCGTCA
AAGGCGCCAAAGGCGGTGTGGTTGGCGAGGCGCTGAAGGACCCAGATGTGTGCACAGACCCTGT
GCGCCTCACCACACACGCCATGGGCGTCAACATCTACAAGGAGGGCCAGGATGTGGTCCTGAAG
CCGGATGCTGAGTACCCAGACTGGCTGTTCCAGATGAACGTGGGCCCCCCCAAGAAGCTGGAGG
AGCTGGACCCCGACACCCGCGAGTACTGGCGACTGCTTCGGAAACACAACATCTGGCGGGAAAA
CCGGCTGAACAAGAACAGGAAGTTCTAATGGGCCAGGAGGGCGCGGTGTCCCCTTGCTCCCCAA
GGACTCTTTTCAGGGAGAAAATGGACTTTGCCAGGACCGAAGGAGGCCCCAGCATGGGGGTGGT
GGCCCTGTAGTGAGGCTAGAGCAGCCCCGGGCCAGTAAGGACATCTAGGCTGGGTGCAGGCTGC
ACTTCTGAGGCCGAGGCAGGCGCAGGGTGAGTTCAAGCCCAGCCTGTGCAGTTTAGCAGCTTAG
TGAGAGCCTGTTGCCCTGTCTCAGATATAAAAGGGTCAGGGCCAGGGATATAGCTCAGTGGCAC
AAGCACCTGCCTGGCAAGTGCAAGGTCATGAGTTCGATTCCTGGTACCAAAAATTAAAAAACGA
AAGGGACCTTGGTTCCACCCTCAGTGCCACAATAAAAAGAAAAGAGACGAGACAAGCTCTCTCG
GCAGCCCTGGCGCACCTTGGCAGCGTCGGACGTTGGGCCAGCAGTGGGGAGCCCACCCCTCCAG
CCTGTGGATCCTGGCCTGCACCTGAGTCCAGGCTGCCCCCTGGGATTGCCTAGCCCAGCCCGGG
AGTCGAGGAGGCCCAAGGTAAGCTGGTGTCTGTGGCAGGTGGCTCAGACCTGACGCAGCTGTCG
GAGCTGGTGTCACAGGCACGGCTGGGTCCAGGTGCTTCAGGATTCGGATCTGTGGCTATCGAGC
CTGGGACCTTTTGGCCCCCAGTGGGTGGTGCTCTCGGGCAGGGGTGGCCTCAGGACTCCGGGCC
AACACCCTCACCCTGCTCAGCAAGCAGAGCCGAGGAGGAAGTGCCCCTTCCTTCTTTCTGGCTA
GGGCTGCAGGGGCCTCATGCGCCCAGGGAGCTGGCCCTGCCCCCCAGCCCTCTCTGGGCCACCC
TGTCGTCTTGTCCTAGGGGCCAGGCCCAAGCCCGTGGGTTGGAGGTGCCCAGTTAGGAAGGAGG
GGCCCTCGTGGGAGGTGCCGTGCTGCAGACTTTACCAGTGTCCTCCCCCTCTGGGGCCCTCAGT
CCTCGTCGGCAAGTCAGGCTAATGGTCCCATCCCAGGGAAGTGGTGGCAACCTAGGGAACCGTG
CTGTGGCCTACACTGATGGCCCAGCCTTCTCACCATTCCCAGAGCAGTCAGGTAAAAACCAGTG
TGACCAGGGACACAGCCCTGCCTGCCCTGTCCCGTCCTGTCATCTCCCACTGCTCCAGCAACAA
AGGAATTGCTGGCCTGACTCACTCCTGCCCCAGGACCTTTGCATGGCTGCAAATGGCGGCTGCA
GCGCCCTCCCCCCTGCACCCTCGCGGCGTCTGCCGTCACCCCTCTTGGTGTCTGCTGTCCTGAC
ACCCACCCTGGTCGTGCTGCAGCCCTGGCCACACCATCACCCTGCTTGTTTTTTTCTAACACTC
AGCACTGACGTTCTGATCTTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005405942	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000011465
	ENSCLAP00000011465.1

RefSeq Acc Id:	XP_005405942 ⟸ XM_005405885
- UniProtKB:	A0A8C2VB72 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAARRLYMATRTWGAWDPRDLSDRVATGRFLVRAYAKKPVMKGFKGVKGAKGGVVGEALKDPDV CTDPVRLTTHAMGVNIYKEGQDVVLKPDAEYPDWLFQMNVGPPKKLEELDPDTREYWRLLRKHN IWRENRLNKNRKF hide sequence

RefSeq Acc Id:

ENSCLAP00000011465 ⟸ ENSCLAT00000011602

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000007908	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000011602	ENTREZGENE
	ENSCLAT00000011602.1	UniProtKB/TrEMBL
InterPro	Ribosomal_L37_mit	UniProtKB/TrEMBL
NCBI Gene	Mrpl54	ENTREZGENE
PANTHER	39S RIBOSOMAL PROTEIN L54, MITOCHONDRIAL	UniProtKB/TrEMBL
	PTHR28595	UniProtKB/TrEMBL
Pfam	Ribosomal_L37	UniProtKB/TrEMBL
UniProt	A0A8C2VB72	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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