Rps3 (ribosomal protein S3) - Rat Genome Database

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Gene: Rps3 (ribosomal protein S3) Chinchilla lanigera
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Symbol: Rps3
Name: ribosomal protein S3
RGD ID: 8779755
Description: ENCODES a protein that exhibits damaged DNA binding (ortholog); DNA binding (ortholog); DNA N-glycosylase activity (ortholog); INVOLVED IN cellular response to DNA damage stimulus (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to nerve growth factor stimulus (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Chromosomal Instability (ortholog); intellectual disability (ortholog); melanoma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: 40S ribosomal protein S3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541416,436,899 - 16,443,073 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541416,436,899 - 16,442,325 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cellular response to DNA damage stimulus  (ISO)
cellular response to hydrogen peroxide  (ISO)
cellular response to nerve growth factor stimulus  (ISO)
cellular response to reactive oxygen species  (ISO)
cellular response to tumor necrosis factor  (ISO)
chromosome segregation  (ISO)
DNA damage response, detection of DNA damage  (ISO)
negative regulation of DNA repair  (ISO)
negative regulation of protein ubiquitination  (ISO)
negative regulation of translation  (ISO)
positive regulation of activated T cell proliferation  (ISO)
positive regulation of apoptotic signaling pathway  (ISO)
positive regulation of base-excision repair  (ISO)
positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis  (ISO)
positive regulation of DNA N-glycosylase activity  (ISO)
positive regulation of DNA repair  (ISO)
positive regulation of endodeoxyribonuclease activity  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of interleukin-2 production  (ISO)
positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage  (ISO)
positive regulation of JUN kinase activity  (ISO)
positive regulation of microtubule polymerization  (ISO)
positive regulation of NF-kappaB transcription factor activity  (ISO)
positive regulation of NIK/NF-kappaB signaling  (ISO)
positive regulation of protein-containing complex assembly  (ISO)
positive regulation of T cell receptor signaling pathway  (ISO)
regulation of apoptotic process  (ISO)
response to TNF agonist  (ISO)
spindle assembly  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Rps3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541416,436,899 - 16,443,073 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541416,436,899 - 16,442,325 (-)NCBIChiLan1.0ChiLan1.0
RPS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1175,399,515 - 75,422,280 (+)EnsemblGRCh38hg38GRCh38
GRCh381175,399,518 - 75,422,302 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371175,110,562 - 75,133,346 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361174,788,210 - 74,794,381 (+)NCBINCBI36hg18NCBI36
Build 341174,788,221 - 74,794,380NCBI
Celera1172,418,313 - 72,424,484 (+)NCBI
Cytogenetic Map11q13.4NCBI
HuRef1171,407,971 - 71,430,530 (+)NCBIHuRef
CHM1_11174,994,110 - 75,016,921 (+)NCBICHM1_1
Rps3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39799,127,103 - 99,132,916 (-)NCBIGRCm39mm39
GRCm39 Ensembl799,127,103 - 99,132,945 (-)Ensembl
GRCm38799,477,896 - 99,483,709 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl799,477,896 - 99,483,738 (-)EnsemblGRCm38mm10GRCm38
MGSCv377106,626,406 - 106,632,219 (-)NCBIGRCm37mm9NCBIm37
MGSCv36799,346,578 - 99,357,709 (-)NCBImm8
Celera799,802,893 - 99,808,694 (-)NCBICelera
Cytogenetic Map7E1NCBI
cM Map754.07NCBI
Rps3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21153,778,363 - 153,783,663 (-)NCBI
Rnor_6.0 Ensembl1164,435,878 - 164,441,167 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01164,435,868 - 164,441,167 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01170,637,728 - 170,643,027 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41156,811,470 - 156,816,770 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11156,889,883 - 156,895,183 (-)NCBI
Celera1151,861,094 - 151,866,394 (-)NCBICelera
Cytogenetic Map1q32NCBI
RPS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11173,762,794 - 73,768,982 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1173,762,794 - 73,768,982 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01170,460,702 - 70,466,909 (+)NCBIMhudiblu_PPA_v0panPan3
RPS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12123,180,515 - 23,187,034 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2123,180,515 - 23,187,034 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2122,946,186 - 22,952,704 (-)NCBI
ROS_Cfam_1.02123,383,445 - 23,389,963 (-)NCBI
UMICH_Zoey_3.12123,181,778 - 23,188,296 (-)NCBI
UNSW_CanFamBas_1.02123,378,071 - 23,384,591 (-)NCBI
UU_Cfam_GSD_1.02123,295,999 - 23,302,524 (-)NCBI
Rps3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494762,598,517 - 62,604,928 (+)NCBI
SpeTri2.0NW_0049364984,198,189 - 4,204,531 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl99,616,456 - 9,630,413 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.199,612,939 - 9,630,404 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2910,814,836 - 10,818,618 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,629,895 - 66,636,462 (+)NCBI
ChlSab1.1 Ensembl166,629,954 - 66,635,344 (+)Ensembl
Vero_WHO_p1.0NW_02366604359,169,727 - 59,176,327 (-)NCBI
Rps3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248171,710,768 - 1,715,923 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000020367   ⟹   ENSCLAP00000020172
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541416,436,899 - 16,443,073 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000020368   ⟹   ENSCLAP00000020173
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541416,437,422 - 16,441,663 (-)Ensembl
RefSeq Acc Id: XM_005379890   ⟹   XP_005379947
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541416,436,899 - 16,442,325 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379947 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005379947   ⟸   XM_005379890
- Sequence:
RefSeq Acc Id: ENSCLAP00000020172   ⟸   ENSCLAT00000020367
RefSeq Acc Id: ENSCLAP00000020173   ⟸   ENSCLAT00000020368


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013819 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000020172 ENTREZGENE
Ensembl Transcript ENSCLAT00000020367 ENTREZGENE
NCBI Gene Rps3 ENTREZGENE