LOC102021956 (alpha-2-macroglobulin) - Rat Genome Database

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Gene: LOC102021956 (alpha-2-macroglobulin) Chinchilla lanigera
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Symbol: LOC102021956
Name: alpha-2-macroglobulin
RGD ID: 8779469
Description: ENCODES a protein that exhibits brain-derived neurotrophic factor binding (ortholog); calcium-dependent protein binding (ortholog); endopeptidase inhibitor activity (ortholog); INVOLVED IN acute inflammatory response to antigenic stimulus (ortholog); acute-phase response (ortholog); embryonic liver development (ortholog); PARTICIPATES IN Alzheimer's disease pathway; immune response pathway; inflammatory response pathway; ASSOCIATED WITH otitis media; Otitis Media with Effusion; suppurative otitis media; FOUND IN extracellular space
Type: protein-coding
RefSeq Status: MODEL
Also known as: A2m
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554136,019,082 - 6,062,529 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554136,019,457 - 6,062,366 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
LOC102021956
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554136,019,082 - 6,062,529 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554136,019,457 - 6,062,366 (+)NCBIChiLan1.0ChiLan1.0
A2M
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl129,067,664 - 9,116,229 (-)EnsemblGRCh38hg38GRCh38
GRCh38129,067,708 - 9,116,229 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37129,220,304 - 9,268,825 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36129,111,571 - 9,159,825 (-)NCBINCBI36hg18NCBI36
Build 34129,111,576 - 9,159,754NCBI
Celera1210,757,430 - 10,805,676 (-)NCBI
Cytogenetic Map12p13.31NCBI
HuRef129,000,837 - 9,049,088 (-)NCBIHuRef
CHM1_1129,189,284 - 9,237,532 (-)NCBICHM1_1
A2m
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396121,612,920 - 121,656,197 (+)NCBIGRCm39mm39
GRCm39 Ensembl6121,612,335 - 121,656,186 (+)Ensembl
GRCm386121,636,165 - 121,679,238 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6121,635,376 - 121,679,227 (+)EnsemblGRCm38mm10GRCm38
MGSCv376121,586,191 - 121,629,256 (+)NCBIGRCm37mm9NCBIm37
MGSCv366121,593,574 - 121,644,846 (+)NCBImm8
MGSCv366122,445,338 - 122,497,328 (+)NCBImm8
Celera6123,474,284 - 123,517,770 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.49NCBI
A2m
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24154,897,770 - 154,947,787 (+)NCBI
Rnor_6.0 Ensembl4154,309,426 - 154,359,137 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl4154,423,209 - 154,472,924 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04154,309,426 - 154,359,138 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04221,393,233 - 221,442,945 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44158,103,711 - 158,153,423 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14158,348,624 - 158,398,358 (+)NCBI
Celera4143,730,195 - 143,781,190 (+)NCBICelera
Cytogenetic Map4q42NCBI
LOC477699
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12736,654,328 - 36,695,775 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,920,641 - 9,962,291 (-)NCBI
ROS_Cfam_1.02737,002,478 - 37,044,674 (+)NCBI
UMICH_Zoey_3.12736,883,699 - 36,925,608 (+)NCBI
UNSW_CanFamBas_1.02736,918,717 - 36,960,000 (+)NCBI
UU_Cfam_GSD_1.0279,452,043 - 9,493,920 (-)NCBI
LOC101959212
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494598,303,198 - 98,346,620 (+)NCBI
SpeTri2.0NW_004936870424,832 - 468,303 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
A2M
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl562,438,017 - 62,485,537 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1562,406,928 - 62,483,690 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2565,274,903 - 65,320,342 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000021118   ⟹   ENSCLAP00000020917
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554136,019,082 - 6,062,529 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000021119   ⟹   ENSCLAP00000020918
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554136,019,082 - 6,062,529 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000021120   ⟹   ENSCLAP00000020919
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554136,019,082 - 6,062,529 (+)Ensembl
RefSeq Acc Id: XM_005378889   ⟹   XP_005378946
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554136,019,457 - 6,062,366 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005378946 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005378946   ⟸   XM_005378889
- Sequence:
RefSeq Acc Id: ENSCLAP00000020917   ⟸   ENSCLAT00000021118
RefSeq Acc Id: ENSCLAP00000020918   ⟸   ENSCLAT00000021119
RefSeq Acc Id: ENSCLAP00000020919   ⟸   ENSCLAT00000021120


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014334 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000020918 ENTREZGENE
Ensembl Transcript ENSCLAT00000021119 ENTREZGENE
NCBI Gene A2m ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-07 LOC102021956  alpha-2-macroglobulin  A2m    Symbol and/or name change 5135510 APPROVED
2016-10-14 A2m  alpha-2-macroglobulin  LOC102021956  alpha-2-macroglobulin  Symbol changed 629549 APPROVED
2015-08-25 LOC102021956  alpha-2-macroglobulin  A2m    Symbol and/or name change 5135510 APPROVED