Acvr1c (activin A receptor type 1C) - Rat Genome Database

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Gene: Acvr1c (activin A receptor type 1C) Chinchilla lanigera
Analyze
Symbol: Acvr1c
Name: activin A receptor type 1C
RGD ID: 8779337
Description: ENCODES a protein that exhibits activin binding (ortholog); activin receptor activity (ortholog); activin receptor activity, type I (ortholog); INVOLVED IN activin receptor signaling pathway (ortholog); apoptotic nuclear changes (ortholog); cell differentiation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); retinal degeneration (ortholog); FOUND IN activin receptor complex (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: activin A receptor, type IC; activin receptor type-1C
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544915,813,856 - 15,858,537 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544915,814,230 - 15,864,747 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Acvr1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544915,813,856 - 15,858,537 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544915,814,230 - 15,864,747 (+)NCBIChiLan1.0ChiLan1.0
ACVR1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382157,526,767 - 157,628,864 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2157,526,767 - 157,628,864 (-)EnsemblGRCh38hg38GRCh38
GRCh372158,383,279 - 158,485,376 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362158,097,150 - 158,193,645 (-)NCBINCBI36Build 36hg18NCBI36
Build 342158,214,411 - 158,310,902NCBI
Celera2151,996,398 - 152,098,507 (-)NCBICelera
Cytogenetic Map2q24.1NCBI
HuRef2150,268,922 - 150,370,677 (-)NCBIHuRef
CHM1_12158,389,261 - 158,491,360 (-)NCBICHM1_1
T2T-CHM13v2.02157,980,200 - 158,081,964 (-)NCBIT2T-CHM13v2.0
Acvr1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39258,157,465 - 58,247,909 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl258,157,465 - 58,247,907 (-)EnsemblGRCm39 Ensembl
GRCm38258,267,453 - 58,357,896 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl258,267,453 - 58,357,895 (-)EnsemblGRCm38mm10GRCm38
MGSCv37258,119,864 - 58,210,169 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36258,087,208 - 58,140,193 (-)NCBIMGSCv36mm8
Celera260,022,538 - 60,113,847 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map233.05NCBI
Acvr1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8363,224,322 - 63,301,252 (-)NCBIGRCr8
mRatBN7.2342,815,490 - 42,892,423 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl342,822,610 - 42,892,327 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx346,155,042 - 46,224,767 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0354,750,410 - 54,820,131 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0352,529,199 - 52,598,998 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0344,272,859 - 44,342,501 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl344,270,653 - 44,342,355 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0349,392,012 - 49,462,621 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4340,027,228 - 40,102,303 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1339,923,599 - 39,998,675 (-)NCBI
Celera340,890,441 - 40,959,920 (-)NCBICelera
Cytogenetic Map3q21NCBI
ACVR1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21360,191,507 - 60,289,620 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B60,206,482 - 60,304,587 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B44,785,808 - 44,883,977 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B162,027,016 - 162,080,583 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B162,034,161 - 162,124,151 (-)Ensemblpanpan1.1panPan2
ACVR1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1363,534,231 - 3,583,310 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl363,541,248 - 3,613,384 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha363,671,176 - 3,750,547 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0363,656,388 - 3,735,771 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl363,662,294 - 3,736,109 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1363,658,544 - 3,737,821 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0363,718,246 - 3,797,628 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0363,756,338 - 3,835,686 (-)NCBIUU_Cfam_GSD_1.0
Acvr1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303120,653,036 - 120,725,005 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646920,892,466 - 20,960,098 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646920,892,715 - 20,964,674 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACVR1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1564,455,989 - 64,529,107 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11564,452,632 - 64,529,329 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21571,381,954 - 71,455,690 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACVR1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11042,935,085 - 43,030,581 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1042,942,284 - 42,994,488 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040156,542,844 - 156,643,373 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acvr1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247328,130,962 - 8,247,289 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247328,130,970 - 8,247,528 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004343   ⟹   ENSCLAP00000004261
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544915,813,856 - 15,858,537 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000004344   ⟹   ENSCLAP00000004262
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544915,814,206 - 15,858,537 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000004345   ⟹   ENSCLAP00000004263
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544915,814,230 - 15,858,537 (+)Ensembl
RefSeq Acc Id: XM_005393407   ⟹   XP_005393464
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544915,814,230 - 15,864,747 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005393464 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004261.1
  ENSCLAP00000004262
  ENSCLAP00000004262.1
  ENSCLAP00000004263.1
Reference Protein Sequences
RefSeq Acc Id: XP_005393464   ⟸   XM_005393407
- UniProtKB: A0A8C2UR23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000004263   ⟸   ENSCLAT00000004345
RefSeq Acc Id: ENSCLAP00000004261   ⟸   ENSCLAT00000004343
RefSeq Acc Id: ENSCLAP00000004262   ⟸   ENSCLAT00000004344
Protein Domains
GS   Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003034 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004343.1 UniProtKB/TrEMBL
  ENSCLAT00000004344 ENTREZGENE
  ENSCLAT00000004344.1 UniProtKB/TrEMBL
  ENSCLAT00000004345.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.60.10 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Activin_recp UniProtKB/TrEMBL
  GS_dom UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
  Snake_toxin-like_sf UniProtKB/TrEMBL
  TGFB_receptor UniProtKB/TrEMBL
NCBI Gene Acvr1c ENTREZGENE
PANTHER ACTIVIN RECEPTOR TYPE-1C UniProtKB/TrEMBL
  PTHR23255 UniProtKB/TrEMBL
Pfam Activin_recp UniProtKB/TrEMBL
  PK_Tyr_Ser-Thr UniProtKB/TrEMBL
  Pkinase UniProtKB/TrEMBL
  TGF_beta_GS UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
  PS51256 UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
  SM00467 UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
  SSF57302 UniProtKB/TrEMBL
UniProt A0A8C2UR23 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UU01_CHILA UniProtKB/TrEMBL
  A0A8C2UWN9_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Acvr1c  activin A receptor type 1C    activin A receptor, type IC  Symbol and/or name change 5135510 APPROVED