Bin1 (bridging integrator 1) - Rat Genome Database

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Gene: Bin1 (bridging integrator 1) Chinchilla lanigera
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Symbol: Bin1
Name: bridging integrator 1
RGD ID: 8777516
Description: ENCODES a protein that exhibits actin filament binding (ortholog); aspartic-type endopeptidase inhibitor activity (ortholog); chaperone binding (ortholog); INVOLVED IN endosome to lysosome transport (ortholog); lipid tube assembly (ortholog); muscle cell differentiation (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); autosomal recessive centronuclear myopathy (ortholog); breast carcinoma (ortholog); FOUND IN axon (ortholog); axon initial segment (ortholog); axon terminus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: myc box-dependent-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554593,399,611 - 3,422,621 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554593,376,149 - 3,423,157 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References


Genomics

Comparative Map Data
Bin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554593,399,611 - 3,422,621 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554593,376,149 - 3,423,157 (+)NCBIChiLan1.0ChiLan1.0
BIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2127,048,027 - 127,107,288 (-)EnsemblGRCh38hg38GRCh38
GRCh382127,048,023 - 127,107,154 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372127,805,599 - 127,864,730 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362127,522,077 - 127,581,334 (-)NCBINCBI36hg18NCBI36
Build 342127,521,838 - 127,581,094NCBI
Celera2121,117,653 - 121,176,919 (-)NCBI
Cytogenetic Map2q14.3NCBI
HuRef2120,113,344 - 120,172,651 (-)NCBIHuRef
CHM1_12127,809,107 - 127,868,406 (-)NCBICHM1_1
Bin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391832,509,671 - 32,568,793 (+)NCBIGRCm39mm39
GRCm39 Ensembl1832,510,283 - 32,568,790 (+)Ensembl
GRCm381832,376,618 - 32,435,740 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1832,377,230 - 32,435,737 (+)EnsemblGRCm38mm10GRCm38
MGSCv371832,536,871 - 32,595,394 (+)NCBIGRCm37mm9NCBIm37
MGSCv361832,520,267 - 32,578,741 (+)NCBImm8
Celera1832,859,551 - 32,918,381 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.01NCBI
Bin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
Rnor_6.0 Ensembl1825,163,561 - 25,222,135 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01825,163,575 - 25,222,139 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01824,878,678 - 24,937,712 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41824,813,407 - 24,872,852 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11824,840,052 - 24,899,497 (+)NCBI
Celera1823,761,867 - 23,818,116 (+)NCBICelera
Cytogenetic Map18p12NCBI
BIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B127,716,543 - 127,775,378 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B127,716,550 - 127,775,378 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B33,168,767 - 33,228,075 (+)NCBIMhudiblu_PPA_v0panPan3
BIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11923,503,934 - 23,534,407 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1923,375,363 - 23,534,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1923,722,237 - 23,775,092 (+)NCBI
ROS_Cfam_1.01924,808,041 - 24,860,795 (+)NCBI
UMICH_Zoey_3.11923,511,306 - 23,564,134 (+)NCBI
UNSW_CanFamBas_1.01923,700,703 - 23,753,544 (+)NCBI
UU_Cfam_GSD_1.01924,831,980 - 24,884,833 (+)NCBI
Bin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530397,432,383 - 97,489,370 (-)NCBI
SpeTri2.0NW_00493646944,128,308 - 44,185,739 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1525,328,674 - 25,383,652 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11525,328,679 - 25,379,675 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21529,008,956 - 29,057,185 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BIN1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1103,112,605 - 3,173,522 (+)NCBI
ChlSab1.1 Ensembl103,113,868 - 3,173,620 (+)Ensembl
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,802 (-)NCBI
Bin1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473213,543,975 - 13,592,942 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005397618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005397634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013521077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01048015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDI01010869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000005659   ⟹   ENSCLAP00000005558
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554593,399,611 - 3,422,621 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000005660   ⟹   ENSCLAP00000005559
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554593,399,611 - 3,422,621 (+)Ensembl
RefSeq Acc Id: XM_005397618   ⟹   XP_005397675
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397619   ⟹   XP_005397676
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397620   ⟹   XP_005397677
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397621   ⟹   XP_005397678
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397622   ⟹   XP_005397679
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397623   ⟹   XP_005397680
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397624   ⟹   XP_005397681
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397625   ⟹   XP_005397682
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397626   ⟹   XP_005397683
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397627   ⟹   XP_005397684
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397628   ⟹   XP_005397685
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397629   ⟹   XP_005397686
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397630   ⟹   XP_005397687
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,376,149 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397631   ⟹   XP_005397688
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397632   ⟹   XP_005397689
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397633   ⟹   XP_005397690
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005397634   ⟹   XP_005397691
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521077   ⟹   XP_013376531
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554593,395,099 - 3,423,157 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005397687   ⟸   XM_005397630
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_005397675   ⟸   XM_005397618
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005397678   ⟸   XM_005397621
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005397679   ⟸   XM_005397622
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_005397680   ⟸   XM_005397623
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005397684   ⟸   XM_005397627
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_005397676   ⟸   XM_005397619
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005397682   ⟸   XM_005397625
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_005397677   ⟸   XM_005397620
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005397683   ⟸   XM_005397626
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_005397688   ⟸   XM_005397631
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_005397690   ⟸   XM_005397633
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_005397681   ⟸   XM_005397624
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005397685   ⟸   XM_005397628
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_005397686   ⟸   XM_005397629
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_005397689   ⟸   XM_005397632
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_005397691   ⟸   XM_005397634
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_013376531   ⟸   XM_013521077
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSCLAP00000005559   ⟸   ENSCLAT00000005660
RefSeq Acc Id: ENSCLAP00000005558   ⟸   ENSCLAT00000005659


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003943 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000005558 ENTREZGENE
  ENSCLAP00000005559 ENTREZGENE
Ensembl Transcript ENSCLAT00000005659 ENTREZGENE
  ENSCLAT00000005660 ENTREZGENE
NCBI Gene Bin1 ENTREZGENE