Ccnb2 (cyclin B2) - Rat Genome Database

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Gene: Ccnb2 (cyclin B2) Chinchilla lanigera
Analyze
Symbol: Ccnb2
Name: cyclin B2
RGD ID: 8775184
Description: INVOLVED IN G2/MI transition of meiotic cell cycle (ortholog); in utero embryonic development (ortholog); negative regulation of meiotic cell cycle process involved in oocyte maturation (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); COVID-19 (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: G2/mitotic-specific cyclin-B2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545015,559,022 - 15,581,760 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545015,558,874 - 15,587,456 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ccnb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545015,559,022 - 15,581,760 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545015,558,874 - 15,587,456 (-)NCBIChiLan1.0ChiLan1.0
CCNB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381559,105,146 - 59,125,045 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1559,105,126 - 59,125,045 (+)EnsemblGRCh38hg38GRCh38
GRCh371559,397,345 - 59,417,244 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361557,184,612 - 57,204,536 (+)NCBINCBI36Build 36hg18NCBI36
Build 341557,184,611 - 57,204,535NCBI
Celera1536,285,270 - 36,305,194 (+)NCBICelera
Cytogenetic Map15q22.2NCBI
HuRef1536,219,537 - 36,239,475 (+)NCBIHuRef
CHM1_11559,515,271 - 59,535,219 (+)NCBICHM1_1
T2T-CHM13v2.01556,907,228 - 56,927,138 (+)NCBIT2T-CHM13v2.0
Ccnb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39970,314,971 - 70,328,836 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl970,314,974 - 70,328,829 (-)EnsemblGRCm39 Ensembl
GRCm38970,407,689 - 70,421,554 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl970,407,692 - 70,421,547 (-)EnsemblGRCm38mm10GRCm38
MGSCv37970,255,496 - 70,269,361 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36970,206,853 - 70,220,718 (-)NCBIMGSCv36mm8
Celera967,623,704 - 67,637,672 (-)NCBICelera
Cytogenetic Map9DNCBI
cM Map939.53NCBI
Ccnb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8879,968,459 - 79,981,717 (-)NCBIGRCr8
mRatBN7.2871,087,594 - 71,100,794 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl871,087,595 - 71,100,874 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx876,621,984 - 76,635,426 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0874,895,005 - 74,908,447 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0872,732,830 - 72,746,269 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0876,847,972 - 76,861,165 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0876,221,508 - 76,233,944 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4874,892,108 - 74,906,181 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1874,911,162 - 74,925,235 (-)NCBI
Celera870,627,900 - 70,641,100 (+)NCBICelera
Cytogenetic Map8q24NCBI
CCNB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21648,367,902 - 48,390,351 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11552,552,052 - 52,572,806 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01538,075,106 - 38,095,699 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11556,382,391 - 56,402,299 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1556,382,391 - 56,402,299 (+)Ensemblpanpan1.1panPan2
CCNB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13024,040,859 - 24,063,084 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3024,040,859 - 24,063,084 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3024,014,627 - 24,036,855 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03024,209,364 - 24,231,601 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3024,209,368 - 24,231,597 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13024,134,552 - 24,156,769 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03024,217,551 - 24,239,776 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03024,361,281 - 24,383,523 (+)NCBIUU_Cfam_GSD_1.0
Ccnb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640102,368,542 - 102,390,483 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647120,216,435 - 20,238,543 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,907,047 - 112,942,235 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11112,907,047 - 112,942,218 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21124,906,568 - 124,942,517 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCNB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12624,389,654 - 24,408,976 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2624,389,642 - 24,409,346 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048116,914,038 - 116,933,832 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccnb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478112,874,020 - 12,905,932 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478112,875,215 - 12,905,878 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000012256   ⟹   ENSCLAP00000012115
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545015,559,022 - 15,581,760 (-)Ensembl
RefSeq Acc Id: XM_005393834   ⟹   XP_005393891
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545015,558,874 - 15,587,456 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518870   ⟹   XP_013374324
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545015,559,030 - 15,584,934 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005393891 (Get FASTA)   NCBI Sequence Viewer  
  XP_013374324 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012115
  ENSCLAP00000012115.1
RefSeq Acc Id: XP_005393891   ⟸   XM_005393834
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VBD7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013374324   ⟸   XM_013518870
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VBD7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000012115   ⟸   ENSCLAT00000012256
Protein Domains
Cyclin C-terminal   Cyclin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008353 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012256 ENTREZGENE
  ENSCLAT00000012256.1 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
InterPro Cyclin UniProtKB/TrEMBL
  Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_A/B-like UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
  Cyclins_cyclin-box UniProtKB/TrEMBL
NCBI Gene Ccnb2 ENTREZGENE
PANTHER PTHR10177 UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
PIRSF Cyclin_A_B_D_E UniProtKB/TrEMBL
PROSITE CYCLINS UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt A0A8C2VBD7 ENTREZGENE, UniProtKB/TrEMBL