Scube2 (signal peptide, CUB domain and EGF like domain containing 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Scube2 (signal peptide, CUB domain and EGF like domain containing 2) Chinchilla lanigera
Analyze
Symbol: Scube2
Name: signal peptide, CUB domain and EGF like domain containing 2
RGD ID: 8773330
Description: ENCODES a protein that exhibits hedgehog family protein binding (ortholog); INVOLVED IN chondrocyte differentiation involved in endochondral bone morphogenesis (ortholog); positive regulation of chondrocyte proliferation (ortholog); positive regulation of ossification (ortholog); ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: signal peptide, CUB and EGF-like domain-containing protein 2; signal peptide, CUB domain, EGF-like 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541424,752,629 - 24,818,336 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541424,751,134 - 24,818,338 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Scube2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541424,752,629 - 24,818,336 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541424,751,134 - 24,818,338 (-)NCBIChiLan1.0ChiLan1.0
SCUBE2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl119,019,476 - 9,138,114 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl119,019,498 - 9,138,114 (-)EnsemblGRCh38hg38GRCh38
GRCh38119,019,476 - 9,091,599 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37119,041,023 - 9,113,146 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36118,998,511 - 9,069,731 (-)NCBINCBI36hg18NCBI36
Build 34118,998,510 - 9,069,731NCBI
Celera119,160,716 - 9,235,000 (-)NCBI
Cytogenetic Map11p15.4NCBI
HuRef118,711,371 - 8,785,710 (-)NCBIHuRef
CHM1_1119,040,008 - 9,112,061 (-)NCBICHM1_1
Scube2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397109,397,897 - 109,464,886 (-)NCBIGRCm39mm39
GRCm39 Ensembl7109,397,883 - 109,464,886 (-)Ensembl
GRCm387109,798,690 - 109,865,679 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7109,798,676 - 109,865,679 (-)EnsemblGRCm38mm10GRCm38
MGSCv377116,942,204 - 117,009,193 (-)NCBIGRCm37mm9NCBIm37
MGSCv367109,589,826 - 109,656,831 (-)NCBImm8
Celera7109,772,842 - 109,839,829 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.53NCBI
Scube2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21163,831,876 - 163,899,925 (-)NCBI
Rnor_6.0 Ensembl1174,428,699 - 174,495,258 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01174,428,056 - 174,495,356 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01181,412,988 - 181,479,843 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41167,423,473 - 167,490,273 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1161,729,792 - 161,797,481 (-)NCBICelera
Cytogenetic Map1q33NCBI
SCUBE2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1118,887,127 - 8,959,669 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl118,888,668 - 8,959,677 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0119,146,533 - 9,219,816 (-)NCBIMhudiblu_PPA_v0panPan3
SCUBE2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12132,370,361 - 32,435,608 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2132,370,913 - 32,574,588 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2131,939,474 - 32,003,782 (-)NCBI
ROS_Cfam_1.02133,244,992 - 33,309,462 (-)NCBI
UMICH_Zoey_3.12132,514,102 - 32,578,016 (-)NCBI
UNSW_CanFamBas_1.02132,680,598 - 32,744,570 (-)NCBI
UU_Cfam_GSD_1.02132,974,398 - 33,038,307 (-)NCBI
Scube2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494752,947,103 - 53,025,364 (+)NCBI
SpeTri2.0NW_0049365288,981,079 - 9,060,033 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCUBE2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.19389,806 - 457,651 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29458,802 - 520,456 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SCUBE2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1155,719,578 - 55,792,950 (+)NCBI
ChlSab1.1 Ensembl155,722,250 - 55,791,371 (+)Ensembl
Scube2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247661,158,607 - 1,241,797 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000025478   ⟹   ENSCLAP00000025232
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541424,752,629 - 24,818,336 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000025479   ⟹   ENSCLAP00000025233
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541424,752,629 - 24,818,336 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000025480   ⟹   ENSCLAP00000025234
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541424,752,629 - 24,818,336 (-)Ensembl
RefSeq Acc Id: XM_013511992   ⟹   XP_013367446
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541424,751,134 - 24,818,338 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013367446 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013367446   ⟸   XM_013511992
- Sequence:
RefSeq Acc Id: ENSCLAP00000025233   ⟸   ENSCLAT00000025479
RefSeq Acc Id: ENSCLAP00000025232   ⟸   ENSCLAT00000025478
RefSeq Acc Id: ENSCLAP00000025234   ⟸   ENSCLAT00000025480


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017333 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000025232 ENTREZGENE
Ensembl Transcript ENSCLAT00000025478 ENTREZGENE
NCBI Gene Scube2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Scube2  signal peptide, CUB domain and EGF like domain containing 2    signal peptide, CUB domain, EGF-like 2  Symbol and/or name change 5135510 APPROVED