Olfm2 (olfactomedin 2) - Rat Genome Database

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Gene: Olfm2 (olfactomedin 2) Chinchilla lanigera
Analyze
Symbol: Olfm2
Name: olfactomedin 2
RGD ID: 8770746
Description: INVOLVED IN locomotory behavior (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); positive regulation of smooth muscle cell differentiation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); cytoplasm (ortholog); extracellular region (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: noelin-2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,264,831 - 1,328,877 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554951,264,831 - 1,328,877 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Olfm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,264,831 - 1,328,877 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554951,264,831 - 1,328,877 (-)NCBIChiLan1.0ChiLan1.0
OLFM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38199,853,718 - 9,936,515 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl199,853,718 - 9,936,515 (-)EnsemblGRCh38hg38GRCh38
GRCh37199,964,394 - 10,047,191 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36199,825,394 - 9,908,070 (-)NCBINCBI36Build 36hg18NCBI36
Build 34199,825,394 - 9,908,070NCBI
Celera199,859,823 - 9,942,535 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef199,545,037 - 9,627,331 (-)NCBIHuRef
CHM1_1199,964,109 - 10,046,786 (-)NCBICHM1_1
T2T-CHM13v2.0199,979,884 - 10,062,687 (-)NCBIT2T-CHM13v2.0
Olfm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39920,578,986 - 20,657,660 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl920,578,986 - 20,657,645 (-)EnsemblGRCm39 Ensembl
GRCm38920,667,690 - 20,746,333 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl920,667,690 - 20,746,349 (-)EnsemblGRCm38mm10GRCm38
MGSCv37920,472,430 - 20,532,658 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36920,418,102 - 20,478,631 (-)NCBIMGSCv36mm8
Celera917,938,428 - 17,996,310 (-)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.6NCBI
Olfm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8827,480,703 - 27,558,416 (-)NCBIGRCr8
mRatBN7.2819,204,472 - 19,282,154 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl819,204,475 - 19,282,117 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx823,224,798 - 23,283,196 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0821,522,638 - 21,581,036 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0819,434,221 - 19,493,166 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0821,684,307 - 21,762,000 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl821,681,266 - 21,743,338 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0821,740,363 - 21,818,045 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4819,685,433 - 19,746,974 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1819,685,433 - 19,746,974 (-)NCBI
Celera820,599,780 - 20,658,825 (-)NCBICelera
Cytogenetic Map8q13NCBI
OLFM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22014,772,348 - 14,855,375 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11913,774,905 - 13,855,608 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0199,408,161 - 9,488,855 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11910,071,375 - 10,151,178 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1910,071,375 - 10,151,183 (-)Ensemblpanpan1.1panPan2
OLFM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12051,148,013 - 51,153,303 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2051,148,157 - 51,153,314 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,955,590 - 51,016,889 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02051,613,108 - 51,674,476 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2051,612,962 - 51,674,473 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,820,875 - 50,882,225 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02051,245,805 - 51,307,078 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02051,486,759 - 51,548,349 (+)NCBIUU_Cfam_GSD_1.0
Olfm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,969,055 - 210,029,710 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936659325,436 - 372,225 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936659324,996 - 385,646 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OLFM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl268,734,081 - 68,807,191 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1268,734,078 - 68,807,207 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2269,063,856 - 69,135,514 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OLFM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.168,939,966 - 8,947,913 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl68,939,603 - 8,947,678 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607411,068,366 - 11,161,713 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Olfm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248282,135,245 - 2,200,332 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248282,134,728 - 2,200,354 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000015887   ⟹   ENSCLAP00000015724
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554951,264,831 - 1,328,877 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000015888   ⟹   ENSCLAP00000015725
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554951,264,831 - 1,314,716 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000015889   ⟹   ENSCLAP00000015726
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554951,265,142 - 1,270,746 (-)Ensembl
RefSeq Acc Id: XM_005405575   ⟹   XP_005405632
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554951,264,831 - 1,314,710 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005405577   ⟹   XP_005405634
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554951,264,831 - 1,328,877 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505369   ⟹   XP_013360823
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554951,264,831 - 1,270,173 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505370   ⟹   XP_013360824
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554951,264,831 - 1,319,337 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005405634   ⟸   XM_005405577
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VPT6 (UniProtKB/TrEMBL),   A0A8C2VLK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005405632   ⟸   XM_005405575
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VJM0 (UniProtKB/TrEMBL),   A0A8C2VLK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360824   ⟸   XM_013505370
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VLK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360823   ⟸   XM_013505369
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VLK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015724   ⟸   ENSCLAT00000015887
RefSeq Acc Id: ENSCLAP00000015726   ⟸   ENSCLAT00000015889
RefSeq Acc Id: ENSCLAP00000015725   ⟸   ENSCLAT00000015888
Protein Domains
Olfactomedin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010808 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015887 ENTREZGENE
  ENSCLAT00000015887.1 UniProtKB/TrEMBL
  ENSCLAT00000015888 ENTREZGENE
  ENSCLAT00000015888.1 UniProtKB/TrEMBL
  ENSCLAT00000015889 ENTREZGENE
  ENSCLAT00000015889.1 UniProtKB/TrEMBL
InterPro Noelin_dom UniProtKB/TrEMBL
  Olfac-like_dom UniProtKB/TrEMBL
NCBI Gene Olfm2 ENTREZGENE
PANTHER OLFACTOMEDIN-RELATED UniProtKB/TrEMBL
  PTHR23192:SF27 UniProtKB/TrEMBL
Pfam Noelin-1 UniProtKB/TrEMBL
  OLF UniProtKB/TrEMBL
PROSITE OLF UniProtKB/TrEMBL
SMART OLF UniProtKB/TrEMBL
UniProt A0A8C2VJM0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VLK1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VPT6 ENTREZGENE, UniProtKB/TrEMBL