Tcf3 (transcription factor 3) - Rat Genome Database

Name: Tcf3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Tcf3 (transcription factor 3) Chinchilla lanigera

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Symbol:

Tcf3

Name:

transcription factor 3

RGD ID:

8767519

Description:

ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN B cell lineage commitment (ortholog); cell development (ortholog); chromatin remodeling (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); agammaglobulinemia (ortholog); Agammaglobulinemia 8 (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

transcription factor E2-alpha

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TCF3 (transcription factor 3)	NCBI	Ortholog
Mus musculus (house mouse):	Tcf3 (transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tcf3 (transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TCF3 (transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TCF3 (transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tcf3 (transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TCF3 (transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TCF3 (transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tcf3 (transcription factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	6,337,870 - 6,367,487 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	6,337,311 - 6,365,193 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute lymphoblastic leukemia (ISO)

agammaglobulinemia (ISO)

Agammaglobulinemia 8 (ISO)

agammaglobulinemia 8A (ISO)

agammaglobulinemia 8B (ISO)

B-lymphoblastic leukemia/lymphoma (ISO)

Burkitt lymphoma (ISO)

cerebral creatine deficiency syndrome (ISO)

colorectal cancer (ISO)

cyclic hematopoiesis (ISO)

genetic disease (ISO)

multicentric Castleman disease (ISO)

multiple myeloma (ISO)

myeloproliferative neoplasm (ISO)

Neoplasm Metastasis (ISO)

Neurodevelopmental Disorders (ISO)

progressive myoclonus epilepsy 9 (ISO)

prostate cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

B cell lineage commitment (ISO)

cell development (ISO)

chromatin remodeling (ISO)

gastrulation (ISO)

gene expression (ISO)

immunoglobulin V(D)J recombination (ISO)

lymphocyte differentiation (ISO)

natural killer cell differentiation (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

Peyer's patch development (ISO)

positive regulation of B cell proliferation (ISO)

positive regulation of cell cycle (ISO)

positive regulation of DNA-binding transcription factor activity (ISO)

positive regulation of DNA-templated transcription (ISO)

positive regulation of gene expression (ISO)

positive regulation of neuron differentiation (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

protein stabilization (ISO)

regulation of DNA-templated transcription (ISO)

regulation of G1/S transition of mitotic cell cycle (ISO)

regulation of transcription by RNA polymerase II (ISO)

response to lipopolysaccharide (ISO)

response to xenobiotic stimulus (ISO)

T cell differentiation in thymus (ISO)

transcription by RNA polymerase II (ISO)

Cellular Component

chromatin (ISO)

cytoplasm (ISO)

cytosol (ISO)

euchromatin (ISO)

nucleoplasm (ISO)

nucleosome (ISO)

nucleus (ISO)

protein-containing complex (ISO)

RNA polymerase II transcription regulator complex (ISO)

transcription regulator complex (ISO)

Molecular Function

bHLH transcription factor binding (ISO)

chromatin binding (ISO)

cis-regulatory region sequence-specific DNA binding (ISO)

DNA binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor binding (ISO)

DNA-binding transcription repressor activity, RNA polymerase II-specific (ISO)

E-box binding (ISO)

identical protein binding (ISO)

mitogen-activated protein kinase kinase kinase binding (ISO)

PDZ domain binding (ISO)

protein binding (ISO)

protein heterodimerization activity (ISO)

protein homodimerization activity (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (ISO)

RNA polymerase II-specific DNA-binding transcription factor binding (ISO)

sequence-specific DNA binding (ISO)

transcription cis-regulatory region binding (ISO)

transcription factor binding (ISO)

vitamin D response element binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Tcf3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	6,337,870 - 6,367,487 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	6,337,311 - 6,365,193 (+)	NCBI	ChiLan1.0	ChiLan1.0

TCF3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	1,609,292 - 1,652,615 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	1,609,291 - 1,652,615 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	1,609,291 - 1,652,614 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	1,560,293 - 1,601,277 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	1,560,294 - 1,601,277	NCBI
Celera	19	1,544,148 - 1,586,451 (-)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	1,383,232 - 1,423,075 (-)	NCBI		HuRef
CHM1_1	19	1,609,123 - 1,649,881 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	1,580,117 - 1,623,781 (-)	NCBI		T2T-CHM13v2.0

Tcf3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	80,245,375 - 80,269,814 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	80,245,348 - 80,269,481 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	80,409,541 - 80,433,976 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	80,409,514 - 80,433,647 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	79,871,910 - 79,896,398 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	79,812,723 - 79,836,736 (-)	NCBI		MGSCv36	mm8
Celera	10	81,426,533 - 81,451,021 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Tcf3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	9,931,251 - 9,952,994 (+)	NCBI		GRCr8
mRatBN7.2	7	9,280,571 - 9,302,315 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	9,280,571 - 9,302,314 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	12,157,100 - 12,178,811 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	14,032,424 - 14,054,151 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	11,900,016 - 11,921,838 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	12,146,642 - 12,168,400 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	12,144,162 - 12,168,410 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	12,316,323 - 12,338,455 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	10,791,311 - 10,813,613 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	10,791,310 - 10,813,165 (+)	NCBI
Celera	7	7,461,200 - 7,481,028 (+)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

TCF3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	5,974,390 - 6,017,153 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	5,205,287 - 5,248,110 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1	19	1,582,297 - 1,622,025 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	1,582,297 - 1,622,025 (-)	Ensembl	panpan1.1		panPan2

TCF3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	57,255,091 - 57,284,223 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	57,254,384 - 57,283,981 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	57,045,568 - 57,076,063 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	57,984,288 - 58,014,495 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	57,985,608 - 58,014,477 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	57,041,346 - 57,071,536 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	57,520,665 - 57,550,910 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	57,722,526 - 57,752,778 (+)	NCBI		UU_Cfam_GSD_1.0

Tcf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	216,921,770 - 216,949,966 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	884,789 - 912,753 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	884,817 - 913,052 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TCF3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	76,859,089 - 76,898,351 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	76,859,079 - 76,906,275 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	78,181,360 - 78,220,554 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TCF3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	1,393,147 - 1,440,515 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	1,393,107 - 1,440,479 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	7,409,480 - 7,459,296 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tcf3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	7,090,605 - 7,121,428 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	7,090,562 - 7,119,970 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005405953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005405954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005405955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005405956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013505276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01062073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01158262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000017662 ⟹ ENSCLAP00000017490

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955495	6,337,870 - 6,367,487 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000017663 ⟹ ENSCLAP00000017491

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955495	6,337,870 - 6,367,487 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000017664 ⟹ ENSCLAP00000017492

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955495	6,337,870 - 6,367,487 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000017665 ⟹ ENSCLAP00000017493

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955495	6,337,870 - 6,363,974 (+)	Ensembl

RefSeq Acc Id:

XM_005405953 ⟹ XP_005406010

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955495	6,337,312 - 6,364,584 (+)	NCBI

Sequence:

show sequence

AAGCTTTTCCTGGGGAGGGGGTGCAGCCAGGGCCTGTCCCCTCCCTTCTCAATTAAGCTTTCTT
TGGAGGGGGTGCTTTGCAACCCTTGGACCTGTGGATTTCCTTGGCGTGGCACTTAGGGGTCCGG
GTCTTCAGAGTGCTGTGACAGCCGCTGGGGAGTCCACCACTTTCCCTTGGGGCAGGTCCTTGGC
CAGCCCTCCCTAGGGGGCGGGTGGCATGTGGGTCGTTGGAACTGAGAGATTGTGACCCCCCTGC
TTCCATTTTAATAAGTGGGTCCCAATCCCTGGGGTTCCTAGGAGGAGTTGACATTTATATCCTC
CCCCATTGTTAGGCTCCCCTGGGCTCTAGGGAGGGGGCTCCAGAGAACCCAGACCTGGGCATTC
CAGATCAGGAAGGGACTTGGTTTGGGGACCCACTTTCCCCAGACCCTCGGCCCTATTCCACCTT
GTGCACTGGGGCCGCAGTTACTCAAATCTTCTTTTCCCCCCCTATTTCTCTGTGTGTGTCTATG
CATTCCTGCATCTCCCTGGGTCTGCCCTGTCCCTGTCACCACGCAGGGCTGTGTCTAGGCCTGG
GGGTCCACCCTGGTTCCTGCCAAAGGATGAGCCAGCCCCAGAGGATGGCGCCAGTGGGCACCGA
CAAGGAGCTGAGCGATCTCCTGGACTTCAGCATGATGTTCCCACTGCCTGTGGCCAATGGGAAG
GGCCGGCCCACCGCCCTCGCTGGAGCCCAGTTTGGAGGTTCAGGTCTTGAGGACCGGTCCGCCT
CAGGCTCCTGGGGCCCCAGTGACCAGAACAATTCCTCTTTCGACCCAAGCCGGAGCTACAGCGA
CAGTGCCCACTTCAGTGACTCACATGGTGGCATCTCAGCACCCGCCTTCCTGGGATCCGGACTT
GGAGGCAAGGGTGGCGAGCGGGGCACATACGCTGCCTTCGGGAGAGAAGCGGGTGTTGGCGGCT
TGACACAGGCTGGCTTCCTGCCGGGAGAGCTGGCCCTGAGCAGCCCTGGGCCGCTGTCACCCTC
GGGCGTCAAGGGCAGCTCGGCGTATTACCCCTCGTTCCCCAGCAACCCCCGGCGGAGAGCCGCG
GACGGCGGCCTGGAATCACAGCCCAAGAAGGGCCGGAAGGTCCCACCCGGTCTTCCTTCCTCGG
TGTACCCCCCCAGCTCAGGTGACGACTATGGTAGGGACGGTGCCTACTCCTCTGACAAGACCCC
AGGCAGCGCCTACCCCACCCCCTTCTACATGGCAGATGGCAGCCTGCACCCCTCAGCAGAGCTT
TGGAGCCCTCCAGGCCAGGTGGGCTTCGGGCCCATGCTGGGCGGTGCCTCGTCCCCCCTACCCC
TGGCGCCTGGTGCGAGCAGCGCCGTGGGTGGCAGTGCATTCAGCGGTCTCCAGCAGCCCGAGCG
CATGGGCTACCAGCTGCACGGAGCCGAGGGAAATGGTACCCTCCCAGCTGTGGCCGCCTTCTCG
GGGCCTGGAGCCACCTATGGCAGCGTCCCCAGCCACACGCCGCCCGTGACTGGGGCCGACAGCC
TCCTAGGCTCCCGTGGGACCTCGGCCGGCAGCTCCGGGGACGCCCTTGGGAAGGCCCTGGCCTC
GATCTACTCCCCAGACCACTCCAGCAGTAACTTCTCTCCCACCCCCTCGACGCCTGCGGGCTCC
CCACATGGCCTGACTGGGACGTCGCAGTGGCCCCGAGCAGGAGCCCCTGGTGCCTTATCGCCCA
GCTACGACGGGGGACTCCATGGCCTGAACAAGATGGAGGACCACCTGGACGAGGCGATCCACGT
GCTCCGCAGCCACGCCGTGGGCACAGCAGGCGACATGCACAGCCTGCTGCCCAGCCATGGCGCT
CTGGCCTCGAGCTTTGCTGGCCCCATGCCAGTAGGCGGGCGCCACGCAGGCCTGGTTGGGGGCG
GCCACTCTGAGGATGGCCTTGCGGGCAGTGCCAGCCTTCTGCACAGCCATGCGGCCCTGCCCAG
CCAGCCTGGTGCCTTGCCTGACCTCGCGCGGCCACCAGACTCTTACAGTGGCCTGGGCCGGGCG
GGCGCCGTGGTGGGCGCGGGCGAGATCAAGCGAGAGGAGAAGGAGGACGAGGAAAACGCGGCAG
CCACTGACCCCGCGGAGGAGGAAAAGAAGGAGCTGAAGGCCCCGCGAGCGCGGACCAGCCCAGA
CGAGGACGAGGACGACCTTCTCCCCCCAGAGCAGAAGGCCGAGAGGGAGAAGGAGCGCCGGGTG
GCCAATAATGCCCGCGAGCGGCTGCGGGTGCGGGACATCAATGAGGCCTTTAAGGAGCTGGGGC
GCATGTGCCAGCTGCACCTCAACAGCGAGAAGCCCCAGACCAAGCTGCTCATCCTGCACCAGGC
CGTGTCGGTCATCCTGAGCCTCGAGCAGCAAGTGCGAGAGCGCAACCTGAACCCCAAAGCAGCC
TGCCTGAAGCGACGAGAAGAGGAGAAGGTGTCCGGTGTGGTCGGGGACCCACAGATGGTGCTTC
CGGCTGCTCATCCGGGCCTCAGCGACACCCACAATCCCACCGGGCACATGTGACAGGGACGCGA
CGAGGGACCAGTCTTGCTTCAGGACCCCTGCGTTCAGATGTGGCCGGAAGGGTCCTGGGTTCCA
TCCGTGGACCCACCCCGG

hide sequence

RefSeq Acc Id:

XM_005405954 ⟹ XP_005406011

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955495	6,337,312 - 6,364,584 (+)	NCBI

Sequence:

show sequence

AAGCTTTTCCTGGGGAGGGGGTGCAGCCAGGGCCTGTCCCCTCCCTTCTCAATTAAGCTTTCTT
TGGAGGGGGTGCTTTGCAACCCTTGGACCTGTGGATTTCCTTGGCGTGGCACTTAGGGGTCCGG
GTCTTCAGAGTGCTGTGACAGCCGCTGGGGAGTCCACCACTTTCCCTTGGGGCAGGTCCTTGGC
CAGCCCTCCCTAGGGGGCGGGTGGCATGTGGGTCGTTGGAACTGAGAGATTGTGACCCCCCTGC
TTCCATTTTAATAAGTGGGTCCCAATCCCTGGGGTTCCTAGGAGGAGTTGACATTTATATCCTC
CCCCATTGTTAGGCTCCCCTGGGCTCTAGGGAGGGGGCTCCAGAGAACCCAGACCTGGGCATTC
CAGATCAGGAAGGGACTTGGTTTGGGGACCCACTTTCCCCAGACCCTCGGCCCTATTCCACCTT
GTGCACTGGGGCCGCAGTTACTCAAATCTTCTTTTCCCCCCCTATTTCTCTGTGTGTGTCTATG
CATTCCTGCATCTCCCTGGGTCTGCCCTGTCCCTGTCACCACGCAGGGCTGTGTCTAGGCCTGG
GGGTCCACCCTGGTTCCTGCCAAAGGATGAGCCAGCCCCAGAGGATGGCGCCAGTGGGCACCGA
CAAGGAGCTGAGCGATCTCCTGGACTTCAGCATGATGTTCCCACTGCCTGTGGCCAATGGGAAG
GGCCGGCCCACCGCCCTCGCTGGAGCCCAGTTTGGAGGTTCAGGTCTTGAGGACCGGTCCGCCT
CAGGCTCCTGGGGCCCCAGTGACCAGAACAATTCCTCTTTCGACCCAAGCCGGAGCTACAGCGA
CAGTGCCCACTTCAGTGACTCACATGGTGGCATCTCAGCACCCGCCTTCCTGGGATCCGGACTT
GGAGGCAAGGGTGGCGAGCGGGGCACATACGCTGCCTTCGGGAGAGAAGCGGGTGTTGGCGGCT
TGACACAGGCTGGCTTCCTGCCGGGAGAGCTGGCCCTGAGCAGCCCTGGGCCGCTGTCACCCTC
GGGCGTCAAGGGCAGCTCGGCGTATTACCCCTCGTTCCCCAGCAACCCCCGGCGGAGAGCCGCG
GACGGCGGCCTGGAATCACAGCCCAAGAAGGGCCGGAAGGTCCCACCCGGTCTTCCTTCCTCGG
TGTACCCCCCCAGCTCAGGTGACGACTATGGTAGGGACGGTGCCTACTCCTCTGACAAGACCCC
AGGCAGCGCCTACCCCACCCCCTTCTACATGGCAGATGGCAGCCTGCACCCCTCAGCAGAGCTT
TGGAGCCCTCCAGGCCAGGTGGGCTTCGGGCCCATGCTGGGCGGTGCCTCGTCCCCCCTACCCC
TGGCGCCTGGTGCGAGCAGCGCCGTGGGTGGCAGTGCATTCAGCGGTCTCCAGCAGCCCGAGCG
CATGGGCTACCAGCTGCACGGAGCCGAGGGAAATGGTACCCTCCCAGCTGTGGCCGCCTTCTCG
GGGCCTGGAGCCACCTATGGCAGCGTCCCCAGCCACACGCCGCCCGTGACTGGGGCCGACAGCC
TCCTAGGCTCCCGTGGGACCTCGGCCGGCAGCTCCGGGGACGCCCTTGGGAAGGCCCTGGCCTC
GATCTACTCCCCAGACCACTCCAGCAGTAACTTCTCTCCCACCCCCTCGACGCCTGCGGGCTCC
CCACATGGCCTGACTGGGACGTCGCAGTGGCCCCGAGCAGGAGCCCCTGGTGCCTTATCGCCCA
GCTACGACGGGGGACTCCATGGCCTGAACAAGATGGAGGACCACCTGGACGAGGCGATCCACGT
GCTCCGCAGCCACGCCGTGGGCACAGCAGGCGACATGCACAGCCTGCTGCCCAGCCATGGCGCT
CTGGCCTCGAGCTTTGCTGGCCCCATGCCAGTAGGCGGGCGCCACGCAGGCCTGGTTGGGGGCG
GCCACTCTGAGGATGGCCTTGCGGGCAGTGCCAGCCTTCTGCACAGCCATGCGGCCCTGCCCAG
CCAGCCTGGTGCCTTGCCTGACCTCGCGCGGCCACCAGACTCTTACAGTGGCCTGGGCCGGGCG
GGCGCCGTGGTGGGCGCGGGCGAGATCAAGCGAGAGGAGAAGGAGGACGAGGAAAACGCGGCAG
CCACTGACCCCGCGGAGGAGGAAAAGAAGGAGCTGAAGGCCCCGCGAGCGCGGACCAGCAGTAC
GGAAGAGGTGCTGTCCTTGGAGGAGAAGGACCTGAGGGACCGGGAGAGGCGCATGGCCAATAAC
GCGCGGGAGCGGGTGCGCGTGCGTGACATTAACGAGGCCTTCCGGGAGCTGGGGCGCATGTGTC
AGCTGCACCTCAAGTCCGACAAGGCGCAGACCAAGCTGCTCATCCTGCAGCAGGCTGTGCAGGT
CATCCTGGGCCTGGAGCAGCAGGTGCGAGAGCGCAACCTGAACCCCAAAGCAGCCTGCCTGAAG
CGACGAGAAGAGGAGAAGGTGTCCGGTGTGGTCGGGGACCCACAGATGGTGCTTCCGGCTGCTC
ATCCGGGCCTCAGCGACACCCACAATCCCACCGGGCACATGTGACAGGGACGCGACGAGGGACC
AGTCTTGCTTCAGGACCCCTGCGTTCAGATGTGGCCGGAAGGGTCCTGGGTTCCATCCGTGGAC
CCACCCCGG

hide sequence

RefSeq Acc Id:

XM_005405955 ⟹ XP_005406012

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955495	6,337,312 - 6,364,584 (+)	NCBI

Sequence:

show sequence

AAGCTTTTCCTGGGGAGGGGGTGCAGCCAGGGCCTGTCCCCTCCCTTCTCAATTAAGCTTTCTT
TGGAGGGGGTGCTTTGCAACCCTTGGACCTGTGGATTTCCTTGGCGTGGCACTTAGGGGTCCGG
GTCTTCAGAGTGCTGTGACAGCCGCTGGGGAGTCCACCACTTTCCCTTGGGGCAGGTCCTTGGC
CAGCCCTCCCTAGGGGGCGGGTGGCATGTGGGTCGTTGGAACTGAGAGATTGTGACCCCCCTGC
TTCCATTTTAATAAGTGGGTCCCAATCCCTGGGGTTCCTAGGAGGAGTTGACATTTATATCCTC
CCCCATTGTTAGGCTCCCCTGGGCTCTAGGGAGGGGGCTCCAGAGAACCCAGACCTGGGCATTC
CAGATCAGGAAGGGACTTGGTTTGGGGACCCACTTTCCCCAGACCCTCGGCCCTATTCCACCTT
GTGCACTGGGGCCGCAGTTACTCAAATCTTCTTTTCCCCCCCTATTTCTCTGTGTGTGTCTATG
CATTCCTGCATCTCCCTGGGTCTGCCCTGTCCCTGTCACCACGCAGGGCTGTGTCTAGGCCTGG
GGGTCCACCCTGGTTCCTGCCAAAGGATGAGCCAGCCCCAGAGGATGGCGCCAGTGGGCACCGA
CAAGGAGCTGAGCGATCTCCTGGACTTCAGCATGATGTTCCCACTGCCTGTGGCCAATGGGAAG
GGCCGGCCCACCGCCCTCGCTGGAGCCCAGTTTGGAGGTTCAGGTCTTGAGGACCGGTCCGCCT
CAGGCTCCTGGGGCCCCAGTGACCAGAACAATTCCTCTTTCGACCCAAGCCGGAGCTACAGCGA
CAGTGCCCACTTCAGTGACTCACATGGTGGCATCTCAGCACCCGCCTTCCTGGGATCCGGACTT
GGAGGCAAGGGTGGCGAGCGGGGCACATACGCTGCCTTCGGGAGAGAAGCGGGTGTTGGCGGCT
TGACACAGGCTGGCTTCCTGCCGGGAGAGCTGGCCCTGAGCAGCCCTGGGCCGCTGTCACCCTC
GGGCGTCAAGGGCAGCTCGGCGTATTACCCCTCGTTCCCCAGCAACCCCCGGCGGAGAGCCGCG
GACGGCGGCCTGGAATCACAGCCCAAGAAGGGCCGGAAGGTCCCACCCGGTCTTCCTTCCTCGG
TGTACCCCCCCAGCTCAGGTGACGACTATGGTAGGGACGGTGCCTACTCCTCTGACAAGACCCC
AGGCAGCGCCTACCCCACCCCCTTCTACATGGCAGATGGCAGCCTGCACCCCTCAGCAGAGCTT
TGGAGCCCTCCAGGCCAGGTGGGCTTCGGGCCCATGCTGGGCGGTGCCTCGTCCCCCCTACCCC
TGGCGCCTGGTGCGAGCAGCGCCGTGGGTGGCAGTGCATTCAGCGGTCTCCAGCAGCCCGAGCG
CATGGGCTACCAGCTGCACGGAGCCGAGGGAAATGGTACCCTCCCAGCTGTGGCCGCCTTCTCG
GGGCCTGGAGCCACCTATGGCAGCGTCCCCAGCCACACGCCGCCCGTGACTGGGGCCGACAGCC
TCCTAGGCTCCCGTGGGACCTCGGCCGGCAGCTCCGGGGACGCCCTTGGGAAGGCCCTGGCCTC
GATCTACTCCCCAGACCACTCCAGCAGTAACTTCTCTCCCACCCCCTCGACGCCTGCGGGCTCC
CCACATGGCCTGACTGGGACGTCGCAGTGGCCCCGAGCAGGAGCCCCTGGTGCCTTATCGCCCA
GCTACGACGGGGGACTCCATGGCCTGAACAAGATGGAGGACCACCTGGACGAGGCGATCCACGT
GCTCCGCAGCCACGCCGTGGGCACAGCAGGCGACATGCACAGCCTGCTGCCCAGCCATGGCGCT
CTGGCCTCGAGCTTTGCTGGCCCCATGCCAGTAGGCGGGCGCCACGCAGGCCTGGTTGGGGGCG
GCCACTCTGAGGATGGCCTTGCGGGCAGTGCCAGCCTTCTGCACAGCCATGCGGCCCTGCCCAG
CCAGCCTGGTGCCTTGCCTGACCTCGCGCGGCCACCAGACTCTTACAGTGGCCTGGGCCGGGCG
GGCGCCGTGGTGGGCGCGGGCGAGATCAAGCGAGAGGAGAAGGAGGACGAGGAAAACGCGGCAG
CCACTGACCCCGCGGAGGAGGAAAAGAAGGAGCTGAAGGCCCCGCGAGCGCGGACCAGTACGGA
AGAGGTGCTGTCCTTGGAGGAGAAGGACCTGAGGGACCGGGAGAGGCGCATGGCCAATAACGCG
CGGGAGCGGGTGCGCGTGCGTGACATTAACGAGGCCTTCCGGGAGCTGGGGCGCATGTGTCAGC
TGCACCTCAAGTCCGACAAGGCGCAGACCAAGCTGCTCATCCTGCAGCAGGCTGTGCAGGTCAT
CCTGGGCCTGGAGCAGCAGGTGCGAGAGCGCAACCTGAACCCCAAAGCAGCCTGCCTGAAGCGA
CGAGAAGAGGAGAAGGTGTCCGGTGTGGTCGGGGACCCACAGATGGTGCTTCCGGCTGCTCATC
CGGGCCTCAGCGACACCCACAATCCCACCGGGCACATGTGACAGGGACGCGACGAGGGACCAGT
CTTGCTTCAGGACCCCTGCGTTCAGATGTGGCCGGAAGGGTCCTGGGTTCCATCCGTGGACCCA
CCCCGG

hide sequence

RefSeq Acc Id:

XM_005405956 ⟹ XP_005406013

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955495	6,337,311 - 6,364,070 (+)	NCBI

Sequence:

show sequence

GAAGCTTTTCCTGGGGAGGGGGTGCAGCCAGGGCCTGTCCCCTCCCTTCTCAATTAAGCTTTCT
TTGGAGGGGGTGCTTTGCAACCCTTGGACCTGTGGATTTCCTTGGCGTGGCACTTAGGGGTCCG
GGTCTTCAGAGTGCTGTGACAGCCGCTGGGGAGTCCACCACTTTCCCTTGGGGCAGGTCCTTGG
CCAGCCCTCCCTAGGGGGCGGGTGGCATGTGGGTCGTTGGAACTGAGAGATTGTGACCCCCCTG
CTTCCATTTTAATAAGTGGGTCCCAATCCCTGGGGTTCCTAGGAGGAGTTGACATTTATATCCT
CCCCCATTGTTAGGCTCCCCTGGGCTCTAGGGAGGGGGCTCCAGAGAACCCAGACCTGGGCATT
CCAGATCAGGAAGGGACTTGGTTTGGGGACCCACTTTCCCCAGACCCTCGGCCCTATTCCACCT
TGTGCACTGGGGCCGCAGTTACTCAAATCTTCTTTTCCCCCCCTATTTCTCTGTGTGTGTCTAT
GCATTCCTGCATCTCCCTGGGTCTGCCCTGTCCCTGTCACCACGCAGGGCTGTGTCTAGGCCTG
GGGGTCCACCCTGGTTCCTGCCAAAGGATGAGCCAGCCCCAGAGGATGGCGCCAGTGGGCACCG
ACAAGGAGCTGAGCGATCTCCTGGACTTCAGCATGATGTTCCCACTGCCTGTGGCCAATGGGAA
GGGCCGGCCCACCGCCCTCGCTGGAGCCCAGTTTGGAGGTTCAGGTCTTGAGGACCGGTCCGCC
TCAGGCTCCTGGGGCCCCAGTGACCAGAACAATTCCTCTTTCGACCCAAGCCGGAGCTACAGCG
ACAGTGCCCACTTCAGTGACTCACATGGTGGCATCTCAGCACCCGCCTTCCTGGGATCCGGACT
TGGAGGCAAGGGTGGCGAGCGGGGCACATACGCTGCCTTCGGGAGAGAAGCGGGTGTTGGCGGC
TTGACACAGGCTGGCTTCCTGCCGGGAGAGCTGGCCCTGAGCAGCCCTGGGCCGCTGTCACCCT
CGGGCGTCAAGGGCAGCTCGGCGTATTACCCCTCGTTCCCCAGCAACCCCCGGCGGAGAGCCGC
GGACGGCGGCCTGGAATCACAGCCCAAGAAGGGCCGGAAGGTCCCACCCGGTCTTCCTTCCTCG
GTGTACCCCCCCAGCTCAGGTGACGACTATGGTAGGGACGGTGCCTACTCCTCTGACAAGACCC
CAGGCAGCGCCTACCCCACCCCCTTCTACATGGCAGATGGCAGCCTGCACCCCTCAGCAGAGCT
TTGGAGCCCTCCAGGCCAGGTGGGCTTCGGGCCCATGCTGGGCGGTGCCTCGTCCCCCCTACCC
CTGGCGCCTGGTGCGAGCAGCGCCGTGGGTGGCAGTGCATTCAGCGGTCTCCAGCAGCCCGAGC
GCATGGGCTACCAGCTGCACGGAGCCGAGGGAAATGGTACCCTCCCAGCTGTGGCCGCCTTCTC
GGGGCCTGGAGCCACCTATGGCAGCGTCCCCAGCCACACGCCGCCCGTGACTGGGGCCGACAGC
CTCCTAGGCTCCCGTGGGACCTCGGCCGGCAGCTCCGGGGACGCCCTTGGGAAGGCCCTGGCCT
CGATCTACTCCCCAGACCACTCCAGCAGTAACTTCTCTCCCACCCCCTCGACGCCTGCGGGCTC
CCCACATGGCCTGACTGGGACGTCGCAGTGGCCCCGAGCAGGAGCCCCTGGTGCCTTATCGCCC
AGCTACGACGGGGGACTCCATGGCCTGAACAAGATGGAGGACCACCTGGACGAGGCGATCCACG
TGCTCCGCAGCCACGCCGTGGGCACAGCAGGCGACATGCACAGCCTGCTGCCCAGCCATGGCGC
TCTGGCCTCGAGCTTTGCTGGCCCCATGCCAGTAGGCGGGCGCCACGCAGGCCTGGTTGGGGGC
GGCCACTCTGAGGATGGCCTTGCGGGCAGTGCCAGCCTTCTGCACAGCCATGCGGCCCTGCCCA
GCCAGCCTGGTGCCTTGCCTGACCTCGCGCGGCCACCAGACTCTTACAGTGGCCTGGGCCGGGC
GGGCGCCGTGGTGGGCGCGGGCGAGATCAAGCGAGAGGAGAAGGAGGACGAGGAAAACGCGGCA
GCCACTGACCCCGCGGAGGAGGAAAAGAAGGAGCTGAAGGCCCCGCGAGCGCGGACCAGCCCAG
ACGAGGACGAGGACGACCTTCTCCCCCCAGAGCAGAAGGCCGAGAGGGAGAAGGAGCGCCGGGT
GGCCAATAATGCCCGCGAGCGGCTGCGGGTGCGGGACATCAATGAGGCCTTTAAGGAGCTGGGG
CGCATGTGCCAGCTGCACCTCAACAGCGAGAAGCCCCAGACCAAGCTGCTCATCCTGCACCAGG
CCGTGTCGGTCATCCTGAGCCTCGAGCAGCAAGTGCGAGCAGTACGGAAGAGGTGCTGTCCTTG
GAGGAGAAGGACCTGAGGGACCGGGAGAGGCGCATGGCCAATAACGCGCGGGAGCGGGTGCGCG
TGCGTGACATTAACGAGGCCTTCCGGGAGCTGGGGCGCATGTGTCAGC

hide sequence

RefSeq Acc Id:

XM_013505276 ⟹ XP_013360730

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955495	6,337,314 - 6,365,193 (+)	NCBI

Sequence:

show sequence

GCTTTTCCTGGGGAGGGGGTGCAGCCAGGGCCTGTCCCCTCCCTTCTCAATTAAGCTTTCTTTG
GAGGGGGTGCTTTGCAACCCTTGGACCTGTGGATTTCCTTGGCGTGGCACTTAGGGGTCCGGGT
CTTCAGAGTGCTGTGACAGCCGCTGGGGAGTCCACCACTTTCCCTTGGGGCAGGTCCTTGGCCA
GCCCTCCCTAGGGGGCGGGTGGCATGTGGGTCGTTGGAACTGAGAGATTGTGACCCCCCTGCTT
CCATTTTAATAAGTGGGTCCCAATCCCTGGGGTTCCTAGGAGGAGTTGACATTTATATCCTCCC
CCATTGTTAGGCTCCCCTGGGCTCTAGGGAGGGGGCTCCAGAGAACCCAGACCTGGGCATTCCA
GATCAGGAAGGGACTTGGTTTGGGGACCCACTTTCCCCAGACCCTCGGCCCTATTCCACCTTGT
GCACTGGGGCCGCAGTTACTCAAATCTTCTTTTCCCCCCCTATTTCTCTGTGTGTGTCTATGCA
TTCCTGCATCTCCCTGGGTCTGCCCTGTCCCTGTCACCACGCAGGGCTGTGTCTAGGCCTGGGG
GTCCACCCTGGTTCCTGCCAAAGGATGAGCCAGCCCCAGAGGATGGCGCCAGTGGGCACCGACA
AGGAGCTGAGCGATCTCCTGGACTTCAGCATGATGTTCCCACTGCCTGTGGCCAATGGGAAGGG
CCGGCCCACCGCCCTCGCTGGAGCCCAGTTTGGAGGTTCAGGTCTTGAGGACCGGTCCGCCTCA
GGCTCCTGGGGCCCCAGTGACCAGAACAATTCCTCTTTCGACCCAAGCCGGAGCTACAGCGACA
GTGCCCACTTCAGTGACTCACATGGTGGCATCTCAGCACCCGCCTTCCTGGGATCCGGACTTGG
AGGCAAGGGTGGCGAGCGGGGCACATACGCTGCCTTCGGGAGAGAAGCGGGTGTTGGCGGCTTG
ACACAGGCTGGCTTCCTGCCGGGAGAGCTGGCCCTGAGCAGCCCTGGGCCGCTGTCACCCTCGG
GCGTCAAGGGCAGCTCGGCGTATTACCCCTCGTTCCCCAGCAACCCCCGGCGGAGAGCCGCGGA
CGGCGGCCTGGAATCACAGCCCAAGAAGGGCCGGAAGGTCCCACCCGGTCTTCCTTCCTCGGTG
TACCCCCCCAGCTCAGGTGACGACTATGGTAGGGACGGTGCCTACTCCTCTGACAAGACCCCAG
GCAGCGCCTACCCCACCCCCTTCTACATGGCAGATGGCAGCCTGCACCCCTCAGCAGAGCTTTG
GAGCCCTCCAGGCCAGGTGGGCTTCGGGCCCATGCTGGGCGGTGCCTCGTCCCCCCTACCCCTG
GCGCCTGGTGCGAGCAGCGCCGTGGGTGGCAGTGCATTCAGCGGTCTCCAGCAGCCCGAGCGCA
TGGGCTACCAGCTGCACGGAGCCGAGGGAAATGGTACCCTCCCAGCTGTGGCCGCCTTCTCGGG
GCCTGGAGCCACCTATGGCAGCGTCCCCAGCCACACGCCGCCCGTGACTGGGGCCGACAGCCTC
CTAGGCTCCCGTGGGACCTCGGCCGGCAGCTCCGGGGACGCCCTTGGGAAGGCCCTGGCCTCGA
TCTACTCCCCAGACCACTCCAGCAGTAACTTCTCTCCCACCCCCTCGACGCCTGCGGGCTCCCC
ACATGGCCTGACTGGGACGTCGCAGTGGCCCCGAGCAGGAGCCCCTGGTGCCTTATCGCCCAGC
TACGACGGGGGACTCCATGGCCTGAACAAGATGGAGGACCACCTGGACGAGGCGATCCACGTGC
TCCGCAGCCACGCCGTGGGCACAGCAGGCGACATGCACAGCCTGCTGCCCAGCCATGGCGCTCT
GGCCTCGAGCTTTGCTGGCCCCATGCCAGTAGGCGGGCGCCACGCAGGCCTGGTTGGGGGCGGC
CACTCTGAGGATGGCCTTGCGGGCAGTGCCAGCCTTCTGCACAGCCATGCGGCCCTGCCCAGCC
AGCCTGGTGCCTTGCCTGACCTCGCGCGGCCACCAGACTCTTACAGTGGCCTGGGCCGGGCGGG
CGCCGTGGTGGGCGCGGGCGAGATCAAGCGAGAGGAGAAGGAGGACGAGGAAAACGCGGCAGCC
ACTGACCCCGCGGAGGAGGAAAAGAAGGAGCTGAAGGCCCCGCGAGCGCGGACCAGAGCGCAAC
CTGAACCCCAAAGCAGCCTGCCTGAAGCGACGAGAAGAGGAGAAGGTGTCCGGTGTGGTCGGGG
ACCCACAGATGGTGCTTCCGGCTGCTCATCCGGGCCTCAGCGACACCCACAATCCCACCGGGCA
CATGTGACAGGGACGCGACGAGGGACCAGTCTTGCTTCAGGACCCCTGCGTTCAGATGTGGCCG
GAAGGGTCCTGGGTTCCATCCGTGGACCCACCCCGGGGTCCACACACACAACTGCCTGGAGCCA
ACCAGAGCCCGTGGCTCCCGGAGGCCAGCCTGAAGGGGACAAAGGGGTCTCGGCGACCTGGCTT
ACTGTTGTGACCACCTCCACCCACGCTAGCTGGCCGCTGGCCCCTGGCCCCACGTATCCTGGCA
CTGCATCTTGGCCCCAGGGACCAGGCTAGGAGGAGCATTTTTTTCCTTTTTTTTGGGGGGGTGT
TATAAACAAGACCAGAAACCGACAAAATATACACTTTGTCAGAAAAAAAAAAAATGCCTTAAGT
ATATAAAGTCGTGGAGGACTCGAACACATCACTCCGGAGGAGGGTGACACTGCAAAGCTGGCTT
CTTCAAAAGCCATCAGCAAATCGTGCCTAAGCGTATTTTTTTTAAGGAGAATAAAATGAACATT
AGTTATGAGGGTTTTTTTCTAATGTAGAAAAGAAAAATAGCAAGGATGTTGCCTTCGGTCTTTT
TTTTTAAAGCTTTCTTTTGCATATGTTTTATAAGCAACAAACTTTTTTGTATGAAAGCCTCGTG
TCTCTTGCTGTTTCTAGAAGTGAGCGGTGCATTTCATGATCAATCAGATTATTAAAAGTATTAA
AAAGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005406010	(Get FASTA)	NCBI Sequence Viewer
	XP_005406011	(Get FASTA)	NCBI Sequence Viewer
	XP_005406012	(Get FASTA)	NCBI Sequence Viewer
	XP_005406013	(Get FASTA)	NCBI Sequence Viewer
	XP_013360730	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000017490
	ENSCLAP00000017490.1
	ENSCLAP00000017491
	ENSCLAP00000017491.1
	ENSCLAP00000017492.1
	ENSCLAP00000017493
	ENSCLAP00000017493.1

RefSeq Acc Id:	XP_005406013 ⟸ XM_005405956
- Peptide Label:	isoform X5
- UniProtKB:	A0A8C2VQU5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHSCISLGLPCPCHHAGLCLGLGVHPGSCQRMSQPQRMAPVGTDKELSDLLDFSMMFPLPVANG KGRPTALAGAQFGGSGLEDRSASGSWGPSDQNNSSFDPSRSYSDSAHFSDSHGGISAPAFLGSG LGGKGGERGTYAAFGREAGVGGLTQAGFLPGELALSSPGPLSPSGVKGSSAYYPSFPSNPRRRA ADGGLESQPKKGRKVPPGLPSSVYPPSSGDDYGRDGAYSSDKTPGSAYPTPFYMADGSLHPSAE LWSPPGQVGFGPMLGGASSPLPLAPGASSAVGGSAFSGLQQPERMGYQLHGAEGNGTLPAVAAF SGPGATYGSVPSHTPPVTGADSLLGSRGTSAGSSGDALGKALASIYSPDHSSSNFSPTPSTPAG SPHGLTGTSQWPRAGAPGALSPSYDGGLHGLNKMEDHLDEAIHVLRSHAVGTAGDMHSLLPSHG ALASSFAGPMPVGGRHAGLVGGGHSEDGLAGSASLLHSHAALPSQPGALPDLARPPDSYSGLGR AGAVVGAGEIKREEKEDEENAAATDPAEEEKKELKAPRARTSPDEDEDDLLPPEQKAEREKERR VANNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVILSLEQQVRAVRKRCCP WRRRT hide sequence

RefSeq Acc Id:	XP_005406012 ⟸ XM_005405955
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C2VU00 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHSCISLGLPCPCHHAGLCLGLGVHPGSCQRMSQPQRMAPVGTDKELSDLLDFSMMFPLPVANG KGRPTALAGAQFGGSGLEDRSASGSWGPSDQNNSSFDPSRSYSDSAHFSDSHGGISAPAFLGSG LGGKGGERGTYAAFGREAGVGGLTQAGFLPGELALSSPGPLSPSGVKGSSAYYPSFPSNPRRRA ADGGLESQPKKGRKVPPGLPSSVYPPSSGDDYGRDGAYSSDKTPGSAYPTPFYMADGSLHPSAE LWSPPGQVGFGPMLGGASSPLPLAPGASSAVGGSAFSGLQQPERMGYQLHGAEGNGTLPAVAAF SGPGATYGSVPSHTPPVTGADSLLGSRGTSAGSSGDALGKALASIYSPDHSSSNFSPTPSTPAG SPHGLTGTSQWPRAGAPGALSPSYDGGLHGLNKMEDHLDEAIHVLRSHAVGTAGDMHSLLPSHG ALASSFAGPMPVGGRHAGLVGGGHSEDGLAGSASLLHSHAALPSQPGALPDLARPPDSYSGLGR AGAVVGAGEIKREEKEDEENAAATDPAEEEKKELKAPRARTSTEEVLSLEEKDLRDRERRMANN ARERVRVRDINEAFRELGRMCQLHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPKAACLK RREEEKVSGVVGDPQMVLPAAHPGLSDTHNPTGHM hide sequence

RefSeq Acc Id:	XP_005406010 ⟸ XM_005405953
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VLV6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHSCISLGLPCPCHHAGLCLGLGVHPGSCQRMSQPQRMAPVGTDKELSDLLDFSMMFPLPVANG KGRPTALAGAQFGGSGLEDRSASGSWGPSDQNNSSFDPSRSYSDSAHFSDSHGGISAPAFLGSG LGGKGGERGTYAAFGREAGVGGLTQAGFLPGELALSSPGPLSPSGVKGSSAYYPSFPSNPRRRA ADGGLESQPKKGRKVPPGLPSSVYPPSSGDDYGRDGAYSSDKTPGSAYPTPFYMADGSLHPSAE LWSPPGQVGFGPMLGGASSPLPLAPGASSAVGGSAFSGLQQPERMGYQLHGAEGNGTLPAVAAF SGPGATYGSVPSHTPPVTGADSLLGSRGTSAGSSGDALGKALASIYSPDHSSSNFSPTPSTPAG SPHGLTGTSQWPRAGAPGALSPSYDGGLHGLNKMEDHLDEAIHVLRSHAVGTAGDMHSLLPSHG ALASSFAGPMPVGGRHAGLVGGGHSEDGLAGSASLLHSHAALPSQPGALPDLARPPDSYSGLGR AGAVVGAGEIKREEKEDEENAAATDPAEEEKKELKAPRARTSPDEDEDDLLPPEQKAEREKERR VANNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVILSLEQQVRERNLNPKA ACLKRREEEKVSGVVGDPQMVLPAAHPGLSDTHNPTGHM hide sequence

RefSeq Acc Id:	XP_005406011 ⟸ XM_005405954
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2VU00 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHSCISLGLPCPCHHAGLCLGLGVHPGSCQRMSQPQRMAPVGTDKELSDLLDFSMMFPLPVANG KGRPTALAGAQFGGSGLEDRSASGSWGPSDQNNSSFDPSRSYSDSAHFSDSHGGISAPAFLGSG LGGKGGERGTYAAFGREAGVGGLTQAGFLPGELALSSPGPLSPSGVKGSSAYYPSFPSNPRRRA ADGGLESQPKKGRKVPPGLPSSVYPPSSGDDYGRDGAYSSDKTPGSAYPTPFYMADGSLHPSAE LWSPPGQVGFGPMLGGASSPLPLAPGASSAVGGSAFSGLQQPERMGYQLHGAEGNGTLPAVAAF SGPGATYGSVPSHTPPVTGADSLLGSRGTSAGSSGDALGKALASIYSPDHSSSNFSPTPSTPAG SPHGLTGTSQWPRAGAPGALSPSYDGGLHGLNKMEDHLDEAIHVLRSHAVGTAGDMHSLLPSHG ALASSFAGPMPVGGRHAGLVGGGHSEDGLAGSASLLHSHAALPSQPGALPDLARPPDSYSGLGR AGAVVGAGEIKREEKEDEENAAATDPAEEEKKELKAPRARTSSTEEVLSLEEKDLRDRERRMAN NARERVRVRDINEAFRELGRMCQLHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPKAACL KRREEEKVSGVVGDPQMVLPAAHPGLSDTHNPTGHM hide sequence

RefSeq Acc Id:

XP_013360730 ⟸ XM_013505276

- Peptide Label:

isoform X1

- Sequence:

show sequence

MHSCISLGLPCPCHHAGLCLGLGVHPGSCQRMSQPQRMAPVGTDKELSDLLDFSMMFPLPVANG
KGRPTALAGAQFGGSGLEDRSASGSWGPSDQNNSSFDPSRSYSDSAHFSDSHGGISAPAFLGSG
LGGKGGERGTYAAFGREAGVGGLTQAGFLPGELALSSPGPLSPSGVKGSSAYYPSFPSNPRRRA
ADGGLESQPKKGRKVPPGLPSSVYPPSSGDDYGRDGAYSSDKTPGSAYPTPFYMADGSLHPSAE
LWSPPGQVGFGPMLGGASSPLPLAPGASSAVGGSAFSGLQQPERMGYQLHGAEGNGTLPAVAAF
SGPGATYGSVPSHTPPVTGADSLLGSRGTSAGSSGDALGKALASIYSPDHSSSNFSPTPSTPAG
SPHGLTGTSQWPRAGAPGALSPSYDGGLHGLNKMEDHLDEAIHVLRSHAVGTAGDMHSLLPSHG
ALASSFAGPMPVGGRHAGLVGGGHSEDGLAGSASLLHSHAALPSQPGALPDLARPPDSYSGLGR
AGAVVGAGEIKREEKEDEENAAATDPAEEEKKELKAPRARTRAQPEPQSSLPEATRRGEGVRCG
RGPTDGASGCSSGPQRHPQSHRAHVTGTRRGTSLASGPLRSDVAGRVLGSIRGPTPGSTHTTAW
SQPEPVAPGGQPEGDKGVSATWLTVVTTSTHASWPLAPGPTYPGTASWPQGPG

hide sequence

Ensembl Acc Id:

ENSCLAP00000017490 ⟸ ENSCLAT00000017662

Ensembl Acc Id:

ENSCLAP00000017491 ⟸ ENSCLAT00000017663

Ensembl Acc Id:

ENSCLAP00000017492 ⟸ ENSCLAT00000017664

Ensembl Acc Id:

ENSCLAP00000017493 ⟸ ENSCLAT00000017665

Protein Domains

bHLH

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012013	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000017662	ENTREZGENE
	ENSCLAT00000017662.1	UniProtKB/TrEMBL
	ENSCLAT00000017663	ENTREZGENE
	ENSCLAT00000017663.1	UniProtKB/TrEMBL
	ENSCLAT00000017664.1	UniProtKB/TrEMBL
	ENSCLAT00000017665	ENTREZGENE
	ENSCLAT00000017665.1	UniProtKB/TrEMBL
Gene3D-CATH	4.10.280.10	UniProtKB/TrEMBL
InterPro	bHLH_dom	UniProtKB/TrEMBL
	HLH_DNA-bd_sf	UniProtKB/TrEMBL
	NeuroDiff_E-box_TFs	UniProtKB/TrEMBL
NCBI Gene	Tcf3	ENTREZGENE
PANTHER	BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR	UniProtKB/TrEMBL
	TRANSCRIPTION FACTOR E2-ALPHA	UniProtKB/TrEMBL
Pfam	HLH	UniProtKB/TrEMBL
PROSITE	BHLH	UniProtKB/TrEMBL
SMART	HLH	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47459	UniProtKB/TrEMBL
UniProt	A0A8C2VLV6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2VNU3_CHILA	UniProtKB/TrEMBL
	A0A8C2VQU5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2VU00	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM