Arih1 (ariadne RBR E3 ubiquitin protein ligase 1) - Rat Genome Database

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Gene: Arih1 (ariadne RBR E3 ubiquitin protein ligase 1) Chinchilla lanigera
Analyze
Symbol: Arih1
Name: ariadne RBR E3 ubiquitin protein ligase 1
RGD ID: 8766703
Description: ENCODES a protein that exhibits ubiquitin conjugating enzyme binding (ortholog); ubiquitin protein ligase binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH aortic aneurysm (ortholog); Bloom syndrome (ortholog); Brugada syndrome 8 (ortholog); FOUND IN Cul2-RING ubiquitin ligase complex (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); Cul4A-RING E3 ubiquitin ligase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1; E3 ubiquitin-protein ligase ARIH1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554504,683,118 - 4,737,994 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554504,683,118 - 4,737,793 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Arih1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554504,683,118 - 4,737,994 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554504,683,118 - 4,737,793 (-)NCBIChiLan1.0ChiLan1.0
ARIH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381572,474,330 - 72,602,987 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1572,474,330 - 72,602,987 (+)EnsemblGRCh38hg38GRCh38
GRCh371572,766,671 - 72,895,328 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361570,553,721 - 70,662,877 (+)NCBINCBI36hg18NCBI36
Build 341570,553,720 - 70,662,877NCBI
Celera1549,652,768 - 49,763,614 (+)NCBI
Cytogenetic Map15q24.1NCBI
HuRef1549,597,019 - 49,709,554 (+)NCBIHuRef
CHM1_11572,884,658 - 72,996,840 (+)NCBICHM1_1
T2T-CHM13v2.01570,291,593 - 70,420,271 (+)NCBI
Arih1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39959,295,837 - 59,395,469 (-)NCBIGRCm39mm39
GRCm39 Ensembl959,295,541 - 59,393,901 (-)Ensembl
GRCm38959,388,554 - 59,488,186 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl959,388,258 - 59,486,618 (-)EnsemblGRCm38mm10GRCm38
MGSCv37959,236,361 - 59,334,181 (-)NCBIGRCm37mm9NCBIm37
MGSCv36959,190,602 - 59,284,291 (-)NCBImm8
Celera956,615,709 - 56,713,470 (-)NCBICelera
Cytogenetic Map9BNCBI
Arih1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2859,777,378 - 59,879,762 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl859,777,379 - 59,880,245 (-)Ensembl
Rnor_6.0864,166,359 - 64,268,555 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl864,166,360 - 64,268,555 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0863,928,309 - 64,030,505 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4863,201,871 - 63,305,302 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1863,223,929 - 63,324,356 (-)NCBI
Celera859,219,248 - 59,321,584 (-)NCBICelera
Cytogenetic Map8q24NCBI
ARIH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v01551,423,132 - 51,534,278 (+)NCBIMhudiblu_PPA_v0panPan3
ARIH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13035,927,277 - 36,040,168 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3035,927,233 - 36,108,381 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3035,863,589 - 35,988,001 (+)NCBI
ROS_Cfam_1.03036,133,344 - 36,257,840 (+)NCBI
UMICH_Zoey_3.13036,084,559 - 36,202,242 (+)NCBI
UNSW_CanFamBas_1.03036,112,246 - 36,236,422 (+)NCBI
UU_Cfam_GSD_1.03036,367,971 - 36,492,251 (+)NCBI
Arih1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640113,974,529 - 114,102,322 (+)NCBI
SpeTri2.0NW_00493647131,822,592 - 31,947,624 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARIH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1760,707,483 - 60,824,117 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2765,167,891 - 65,209,110 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARIH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12610,890,440 - 11,002,812 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048130,582,412 - 130,699,103 (+)NCBIVero_WHO_p1.0
Arih1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247811,567,343 - 1,665,766 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000009980   ⟹   ENSCLAP00000009851
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554504,683,118 - 4,737,994 (-)Ensembl
RefSeq Acc Id: XM_013518906   ⟹   XP_013374360
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554504,683,118 - 4,737,793 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013374360 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013374360   ⟸   XM_013518906
- Sequence:
RefSeq Acc Id: ENSCLAP00000009851   ⟸   ENSCLAT00000009980
Protein Domains
RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006824 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000009851 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009980 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Ariadne UniProtKB/TrEMBL
  E3_UB_ligase_RBR UniProtKB/TrEMBL
  IBR_dom UniProtKB/TrEMBL
  TRIAD_supradom UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Arih1 ENTREZGENE
PANTHER PTHR11685 UniProtKB/TrEMBL
Pfam Ariadne UniProtKB/TrEMBL
  IBR UniProtKB/TrEMBL
PROSITE TRIAD UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART IBR UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
UniProt A0A8C2V461_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Arih1  ariadne RBR E3 ubiquitin protein ligase 1    ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED