Anp32b (acidic nuclear phosphoprotein 32 family member B) - Rat Genome Database

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Gene: Anp32b (acidic nuclear phosphoprotein 32 family member B) Chinchilla lanigera
Analyze
Symbol: Anp32b
Name: acidic nuclear phosphoprotein 32 family member B
RGD ID: 8764573
Description: ENCODES a protein that exhibits histone binding (ortholog); RNA polymerase binding (ortholog); INVOLVED IN inner ear development (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of cell differentiation (ortholog); PARTICIPATES IN CRM1 export pathway; ASSOCIATED WITH congenital disorder of glycosylation Ii (ortholog); congenital disorder of glycosylation type II (ortholog); congenital myasthenic syndrome 14 (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acidic (leucine-rich) nuclear phosphoprotein 32 family, member B; acidic leucine-rich nuclear phosphoprotein 32 family member B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541927,471,930 - 27,488,065 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541927,471,539 - 27,553,078 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleolus  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Anp32b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541927,471,930 - 27,488,065 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541927,471,539 - 27,553,078 (-)NCBIChiLan1.0ChiLan1.0
ANP32B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38997,983,341 - 98,015,943 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl997,983,341 - 98,015,943 (+)EnsemblGRCh38hg38GRCh38
GRCh379100,745,623 - 100,778,225 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36999,785,310 - 99,818,046 (+)NCBINCBI36Build 36hg18NCBI36
Build 34997,825,197 - 97,857,776NCBI
Celera971,259,753 - 71,292,490 (+)NCBICelera
Cytogenetic Map9q22.33NCBI
HuRef970,346,857 - 70,378,291 (+)NCBIHuRef
CHM1_19100,892,012 - 100,924,659 (+)NCBICHM1_1
T2T-CHM13v2.09110,155,281 - 110,187,884 (+)NCBIT2T-CHM13v2.0
Anp32b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39446,450,926 - 46,472,657 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl446,450,902 - 46,472,657 (+)EnsemblGRCm39 Ensembl
GRCm38446,450,926 - 46,472,657 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl446,450,902 - 46,472,657 (+)EnsemblGRCm38mm10GRCm38
MGSCv37446,463,989 - 46,485,395 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36446,472,215 - 46,493,623 (+)NCBIMGSCv36mm8
Celera446,475,780 - 46,497,386 (+)NCBICelera
Cytogenetic Map4B1NCBI
cM Map424.79NCBI
Anp32b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8565,538,872 - 65,561,305 (+)NCBIGRCr8
mRatBN7.2560,743,077 - 60,765,726 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl560,743,443 - 60,765,717 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx562,715,573 - 62,737,025 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0564,534,945 - 64,556,401 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0564,504,360 - 64,525,815 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0562,070,709 - 62,094,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl562,071,346 - 62,094,633 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0566,592,162 - 66,624,323 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4563,044,718 - 63,058,038 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1563,044,896 - 63,058,218 (+)NCBI
Celera559,304,609 - 59,327,346 (+)NCBICelera
Cytogenetic Map5q22NCBI
ANP32B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21141,439,478 - 41,477,862 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1941,441,855 - 41,479,153 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0969,075,972 - 69,108,178 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1997,198,447 - 97,228,536 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl997,207,823 - 97,228,542 (+)Ensemblpanpan1.1panPan2
ANP32B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11155,230,017 - 55,272,744 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1155,243,854 - 55,350,194 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1153,663,727 - 53,706,272 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01156,342,087 - 56,384,716 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1156,360,282 - 56,462,127 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11154,838,237 - 54,880,571 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01154,868,718 - 54,911,284 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01155,565,302 - 55,607,676 (+)NCBIUU_Cfam_GSD_1.0
Anp32b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947170,187,829 - 170,210,294 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365246,742,853 - 6,756,038 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365246,735,047 - 6,757,874 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANP32B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1239,842,067 - 239,868,403 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11239,842,062 - 239,868,404 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21268,022,424 - 268,037,942 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANP32B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11241,400,796 - 41,432,756 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1241,401,188 - 41,432,711 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603838,442,243 - 38,474,164 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Anp32b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248252,814,758 - 2,844,008 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000023493   ⟹   ENSCLAP00000023272
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541927,471,930 - 27,488,065 (-)Ensembl
RefSeq Acc Id: XM_005382838   ⟹   XP_005382895
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541927,471,539 - 27,553,078 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005382839   ⟹   XP_005382896
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541927,471,539 - 27,489,002 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013513224   ⟹   XP_013368678
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541927,471,539 - 27,505,376 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005382895 (Get FASTA)   NCBI Sequence Viewer  
  XP_005382896 (Get FASTA)   NCBI Sequence Viewer  
  XP_013368678 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023272
  ENSCLAP00000023272.1
Reference Protein Sequences
RefSeq Acc Id: XP_005382895   ⟸   XM_005382838
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005382896   ⟸   XM_005382839
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013368678   ⟸   XM_013513224
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000023272   ⟸   ENSCLAT00000023493
Protein Domains
U2A'/phosphoprotein 32 family A C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015962 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023493 ENTREZGENE
  ENSCLAT00000023493.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro AN32 UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  U2A'_phosphoprotein32A_C UniProtKB/TrEMBL
NCBI Gene Anp32b ENTREZGENE
PANTHER ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 FAMILY MEMBER B UniProtKB/TrEMBL
  PTHR11375 UniProtKB/TrEMBL
Pfam LRR_9 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRRcap UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A8C2W095_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Anp32b  acidic nuclear phosphoprotein 32 family member B    acidic (leucine-rich) nuclear phosphoprotein 32 family, member B  Symbol and/or name change 5135510 APPROVED