Gas7 (growth arrest specific 7) - Rat Genome Database

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Gene: Gas7 (growth arrest specific 7) Chinchilla lanigera
Analyze
Symbol: Gas7
Name: growth arrest specific 7
RGD ID: 8761121
Description: ENCODES a protein that exhibits actin filament binding (ortholog); identical protein binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); actin filament polymerization (ortholog); neuron differentiation (ortholog); ASSOCIATED WITH congenital myopathy 6 (ortholog); obesity (ortholog); FOUND IN actin filament (ortholog); ruffle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: growth arrest-specific 7; growth arrest-specific protein 7
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554677,112,123 - 7,217,591 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554676,979,718 - 7,223,948 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
actin filament  (ISO)
ruffle  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Gas7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554677,112,123 - 7,217,591 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554676,979,718 - 7,223,948 (+)NCBIChiLan1.0ChiLan1.0
GAS7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38179,910,606 - 10,198,606 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl179,910,606 - 10,198,606 (-)EnsemblGRCh38hg38GRCh38
GRCh37179,813,923 - 10,101,923 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36179,754,651 - 10,042,593 (-)NCBINCBI36Build 36hg18NCBI36
Build 34179,754,650 - 9,803,491NCBI
Celera179,845,239 - 10,133,053 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef179,714,248 - 10,001,809 (-)NCBIHuRef
CHM1_1179,823,939 - 10,111,756 (-)NCBICHM1_1
T2T-CHM13v2.0179,818,341 - 10,106,358 (-)NCBIT2T-CHM13v2.0
Gas7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391167,344,083 - 67,579,818 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1167,345,917 - 67,575,800 (+)EnsemblGRCm39 Ensembl
GRCm381167,453,257 - 67,688,992 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1167,455,437 - 67,688,990 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1167,455,091 - 67,688,990 (+)EnsemblGRCm38mm10GRCm38
MGSCv371167,400,038 - 67,502,494 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361167,349,193 - 67,501,154 (+)NCBIMGSCv36mm8
Celera1174,530,130 - 74,631,611 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1141.13NCBI
Gas7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81052,651,690 - 52,882,244 (+)NCBIGRCr8
mRatBN7.21052,152,718 - 52,383,283 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1052,152,493 - 52,383,276 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1056,949,633 - 57,040,722 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01056,438,651 - 56,529,728 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01051,948,722 - 52,039,787 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01054,010,723 - 54,240,805 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1054,126,486 - 54,236,476 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01053,760,396 - 53,988,137 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41054,312,438 - 54,403,868 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11054,332,925 - 54,417,490 (+)NCBI
Celera1051,473,558 - 51,564,712 (+)NCBICelera
Cytogenetic Map10q24NCBI
GAS7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21963,549,989 - 63,838,044 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11768,360,635 - 68,647,526 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01741,454,100 - 41,743,777 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11746,200,143 - 46,486,908 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1746,200,364 - 46,480,618 (+)Ensemblpanpan1.1panPan2
GAS7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1534,334,477 - 34,457,189 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl534,339,098 - 34,457,164 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha534,471,116 - 34,680,909 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0534,438,930 - 34,648,881 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl534,424,544 - 34,649,965 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1534,404,480 - 34,614,798 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0534,362,564 - 34,572,294 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0534,543,254 - 34,753,149 (-)NCBIUU_Cfam_GSD_1.0
Gas7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560249,416,302 - 49,575,546 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365952,894,643 - 2,993,545 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365952,890,336 - 3,011,314 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAS7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1254,752,507 - 54,973,515 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11254,752,436 - 54,974,535 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21257,510,518 - 57,541,651 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GAS7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1169,256,305 - 9,546,996 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl169,258,438 - 9,385,235 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605912,014,831 - 12,087,191 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gas7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478612,345,003 - 12,575,417 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478612,341,987 - 12,575,651 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000015976   ⟹   ENSCLAP00000015813
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554677,112,123 - 7,217,591 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000015977   ⟹   ENSCLAP00000015814
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554677,129,142 - 7,217,591 (+)Ensembl
RefSeq Acc Id: XM_005399366   ⟹   XP_005399423
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554676,979,718 - 7,223,948 (+)NCBI
Sequence:
RefSeq Acc Id: XR_263350
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554676,979,718 - 7,223,948 (+)NCBI
Sequence:
RefSeq Acc Id: XR_263351
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554676,979,718 - 7,223,948 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005399423 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015813
  ENSCLAP00000015813.1
  ENSCLAP00000015814.1
RefSeq Acc Id: XP_005399423   ⟸   XM_005399366
- UniProtKB: A0A8C2VHT6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000015814   ⟸   ENSCLAT00000015977
Ensembl Acc Id: ENSCLAP00000015813   ⟸   ENSCLAT00000015976
Protein Domains
F-BAR   WW


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010871 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015976 ENTREZGENE
  ENSCLAT00000015976.1 UniProtKB/TrEMBL
  ENSCLAT00000015977.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
  2.20.70.10 UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/TrEMBL
  F_BAR UniProtKB/TrEMBL
  FCH_dom UniProtKB/TrEMBL
  GAS7_F-BAR UniProtKB/TrEMBL
  WW_dom UniProtKB/TrEMBL
  WW_dom_sf UniProtKB/TrEMBL
NCBI Gene Gas7 ENTREZGENE
PANTHER GROWTH ARREST-SPECIFIC PROTEIN 7 UniProtKB/TrEMBL
  PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 UniProtKB/TrEMBL
Pfam FCH UniProtKB/TrEMBL
  PF00397 UniProtKB/TrEMBL
  WW_FCH_linker UniProtKB/TrEMBL
PROSITE F_BAR UniProtKB/TrEMBL
  WW_DOMAIN_1 UniProtKB/TrEMBL
  WW_DOMAIN_2 UniProtKB/TrEMBL
SMART FCH UniProtKB/TrEMBL
  SM00456 UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/TrEMBL
  SSF51045 UniProtKB/TrEMBL
UniProt A0A8C2VHT6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VN86_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Gas7  growth arrest specific 7    growth arrest-specific 7  Symbol and/or name change 5135510 APPROVED