Gfod2 (Gfo/Idh/MocA-like oxidoreductase domain containing 2) - Rat Genome Database

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Gene: Gfod2 (Gfo/Idh/MocA-like oxidoreductase domain containing 2) Chinchilla lanigera
Analyze
Symbol: Gfod2
Name: Gfo/Idh/MocA-like oxidoreductase domain containing 2 (Ensembl:glucose-fructose oxidoreductase domain containing 2)
RGD ID: 8760855
Description: INVOLVED IN extracellular matrix organization (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); chromosome 16q22 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glucose-fructose oxidoreductase domain containing 2; glucose-fructose oxidoreductase domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554848,963,297 - 9,009,791 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554848,963,297 - 9,009,791 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gfod2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554848,963,297 - 9,009,791 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554848,963,297 - 9,009,791 (+)NCBIChiLan1.0ChiLan1.0
GFOD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,674,536 - 67,719,316 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,674,531 - 67,719,339 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,708,439 - 67,753,219 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,265,940 - 66,310,718 (-)NCBINCBI36Build 36hg18NCBI36
Celera1652,216,926 - 52,261,762 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,581,347 - 53,626,167 (-)NCBIHuRef
CHM1_11669,116,149 - 69,161,007 (-)NCBICHM1_1
T2T-CHM13v2.01673,469,304 - 73,514,085 (-)NCBIT2T-CHM13v2.0
Gfod2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,440,676 - 106,485,299 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,440,486 - 106,485,296 (-)EnsemblGRCm39 Ensembl
GRCm388105,714,044 - 105,758,666 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,713,854 - 105,758,664 (-)EnsemblGRCm38mm10GRCm38
MGSCv378108,240,013 - 108,282,507 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,605,242 - 108,647,736 (-)NCBIMGSCv36mm8
Celera8109,941,031 - 109,986,208 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Gfod2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,508,626 - 50,556,945 (-)NCBIGRCr8
mRatBN7.21933,599,689 - 33,647,060 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,604,187 - 33,647,004 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,419,755 - 40,462,567 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,073,087 - 41,115,901 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,370,898 - 43,413,958 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,678,488 - 37,725,623 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,682,734 - 37,725,623 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,545,192 - 48,592,749 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,547,997 - 35,592,039 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,553,514 - 35,596,873 (-)NCBI
Celera1933,032,133 - 33,074,942 (-)NCBICelera
Cytogenetic Map19q12NCBI
GFOD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21877,202,480 - 77,252,689 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11683,114,943 - 83,164,091 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01648,018,181 - 48,067,345 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,407,669 - 67,456,632 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,407,669 - 67,456,632 (-)Ensemblpanpan1.1panPan2
GFOD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,738,653 - 81,776,853 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,766,864 - 81,776,206 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,728,412 - 81,766,615 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,173,836 - 82,212,019 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,173,822 - 82,212,019 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,000,185 - 82,038,350 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,681,718 - 81,719,878 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,324,273 - 82,362,428 (+)NCBIUU_Cfam_GSD_1.0
Gfod2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,473,905 - 41,523,488 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,064,098 - 18,114,749 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,065,626 - 18,114,683 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GFOD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,293,967 - 28,348,161 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,293,957 - 28,348,197 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GFOD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,715,257 - 59,769,806 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl559,715,287 - 59,770,089 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,444,121 - 22,523,566 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gfod2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,634,576 - 18,676,046 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,634,600 - 18,677,974 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008483   ⟹   ENSCLAP00000008356
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554848,963,297 - 9,009,791 (+)Ensembl
RefSeq Acc Id: XM_005403626   ⟹   XP_005403683
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554848,963,297 - 9,009,791 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503954   ⟹   XP_013359408
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554848,963,297 - 9,009,791 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005403683 (Get FASTA)   NCBI Sequence Viewer  
  XP_013359408 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000008356
  ENSCLAP00000008356.1
Reference Protein Sequences
RefSeq Acc Id: XP_005403683   ⟸   XM_005403626
- UniProtKB: A0A8C2V1B3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359408   ⟸   XM_013503954
- UniProtKB: A0A8C2V1B3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000008356   ⟸   ENSCLAT00000008483
Protein Domains
Gfo/Idh/MocA-like oxidoreductase C-terminal   Gfo/Idh/MocA-like oxidoreductase N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005850 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008483 ENTREZGENE
  ENSCLAT00000008483.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro Gfo/Idh/MocA-like_OxRdtase_C UniProtKB/TrEMBL
  Gfo/Idh/MocA-like_OxRdtase_N UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
NCBI Gene Gfod2 ENTREZGENE
PANTHER BCDNA.GH03377 UniProtKB/TrEMBL
  GLUCOSE-FRUCTOSE OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam GFO_IDH_MocA UniProtKB/TrEMBL
  GFO_IDH_MocA_C UniProtKB/TrEMBL
Superfamily-SCOP Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
UniProt A0A8C2V1B3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-09 Gfod2  Gfo/Idh/MocA-like oxidoreductase domain containing 2  Gfod2  glucose-fructose oxidoreductase domain containing 2  Symbol and/or name change 5135510 APPROVED