Cd2 (CD2 molecule) - Rat Genome Database

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Gene: Cd2 (CD2 molecule) Chinchilla lanigera
Analyze
Symbol: Cd2
Name: CD2 molecule
RGD ID: 8760319
Description: ENCODES a protein that exhibits identical protein binding (ortholog); protein kinase binding (ortholog); receptor tyrosine kinase binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); heterotypic cell-cell adhesion (ortholog); natural killer cell activation (ortholog); ASSOCIATED WITH genetic disease (ortholog); nephrotic syndrome (ortholog); prostate cancer (ortholog); FOUND IN cell surface (ortholog); cell-cell junction (ortholog); cytoplasmic side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: T-cell surface antigen CD2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543519,861,527 - 19,873,581 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543519,861,658 - 19,876,383 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543519,861,527 - 19,873,581 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543519,861,658 - 19,876,383 (+)NCBIChiLan1.0ChiLan1.0
CD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381116,754,430 - 116,769,229 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1116,754,430 - 116,769,229 (+)EnsemblGRCh38hg38GRCh38
GRCh371117,297,052 - 117,311,851 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361117,098,609 - 117,113,374 (+)NCBINCBI36Build 36hg18NCBI36
Build 341117,009,143 - 117,023,892NCBI
Celera1115,525,598 - 115,540,363 (+)NCBICelera
Cytogenetic Map1p13.1NCBI
HuRef1115,156,224 - 115,170,989 (+)NCBIHuRef
CHM1_11117,411,979 - 117,426,744 (+)NCBICHM1_1
T2T-CHM13v2.01116,764,873 - 116,779,672 (+)NCBIT2T-CHM13v2.0
Cd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393101,183,224 - 101,195,255 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3101,183,215 - 101,195,255 (-)EnsemblGRCm39 Ensembl
GRCm383101,275,908 - 101,287,939 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3101,275,899 - 101,287,939 (-)EnsemblGRCm38mm10GRCm38
MGSCv373101,079,831 - 101,091,862 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363101,404,969 - 101,417,000 (-)NCBIMGSCv36mm8
Celera3103,490,645 - 103,502,693 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map344.17NCBI
Cd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82191,399,510 - 191,412,659 (-)NCBIGRCr8
mRatBN7.22188,710,895 - 188,724,044 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2188,710,900 - 188,724,026 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2196,344,644 - 196,357,772 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02194,196,679 - 194,209,718 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02189,021,373 - 189,034,432 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02203,666,706 - 203,680,073 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2203,666,637 - 203,680,083 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02223,111,198 - 223,124,565 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42196,332,547 - 196,346,221 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12196,295,300 - 196,660,648 (-)NCBI
Celera2181,149,611 - 181,162,644 (-)NCBICelera
Cytogenetic Map2q34NCBI
CD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21109,406,383 - 109,421,268 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11109,005,949 - 109,020,747 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0185,752,522 - 85,767,323 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11120,749,918 - 120,764,664 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1120,749,918 - 120,764,659 (-)Ensemblpanpan1.1panPan2
CD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11754,171,764 - 54,184,221 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1754,171,848 - 54,184,225 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1753,818,723 - 53,831,191 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01755,052,775 - 55,065,243 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1755,052,794 - 55,065,240 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11754,089,963 - 54,102,397 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01754,126,006 - 54,138,470 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01754,699,355 - 54,711,821 (+)NCBIUU_Cfam_GSD_1.0
Cd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505812,573,676 - 12,586,886 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366271,902,120 - 1,915,257 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366271,902,120 - 1,915,257 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4103,963,345 - 103,977,292 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14103,963,802 - 103,976,971 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24113,928,523 - 113,941,699 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12016,954,925 - 16,970,066 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2016,953,811 - 16,970,044 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603819,634,620 - 19,649,798 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477212,433,796 - 12,444,740 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477212,428,885 - 12,445,003 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000011502   ⟹   ENSCLAP00000011365
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543519,861,527 - 19,873,581 (+)Ensembl
RefSeq Acc Id: XM_005389045   ⟹   XP_005389102
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543519,861,856 - 19,876,383 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005389046   ⟹   XP_005389103
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543519,861,658 - 19,876,383 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516558   ⟹   XP_013372012
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543519,861,658 - 19,873,473 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005389102 (Get FASTA)   NCBI Sequence Viewer  
  XP_005389103 (Get FASTA)   NCBI Sequence Viewer  
  XP_013372012 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011365
  ENSCLAP00000011365.1
RefSeq Acc Id: XP_005389102   ⟸   XM_005389045
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YND1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005389103   ⟸   XM_005389046
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013372012   ⟸   XM_013516558
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000011365   ⟸   ENSCLAT00000011502
Protein Domains
Immunoglobulin C2-set


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007838 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011502 ENTREZGENE
  ENSCLAT00000011502.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD2 UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_C2-set UniProtKB/TrEMBL
NCBI Gene Cd2 ENTREZGENE
PANTHER SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE UniProtKB/TrEMBL
  T-CELL SURFACE ANTIGEN CD2 UniProtKB/TrEMBL
Pfam C2-set UniProtKB/TrEMBL
PRINTS CD2ANTIGEN UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8C2YND1 ENTREZGENE, UniProtKB/TrEMBL