Atp6v1b1 (ATPase H+ transporting V1 subunit B1) - Rat Genome Database

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Gene: Atp6v1b1 (ATPase H+ transporting V1 subunit B1) Chinchilla lanigera
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Symbol: Atp6v1b1
Name: ATPase H+ transporting V1 subunit B1
RGD ID: 8758678
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); proton transmembrane transporter activity (ortholog); INVOLVED IN adult behavior (ortholog); ATP metabolic process (ortholog); calcium ion homeostasis (ortholog); ASSOCIATED WITH Distal Renal Tubular Acidosis 2 with Progressive Nerve Deafness (ortholog); genetic disease (ortholog); Hearing Loss (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B1; V-type proton ATPase subunit B, kidney isoform
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542414,256,096 - 14,282,410 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542414,256,096 - 14,281,572 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Atp6v1b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542414,256,096 - 14,282,410 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542414,256,096 - 14,281,572 (-)NCBIChiLan1.0ChiLan1.0
ATP6V1B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl270,935,900 - 70,965,431 (+)EnsemblGRCh38hg38GRCh38
GRCh38270,935,900 - 70,965,431 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37271,163,030 - 71,192,561 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36271,016,506 - 71,046,069 (+)NCBINCBI36hg18NCBI36
Build 34271,074,674 - 71,104,207NCBI
Celera271,013,684 - 71,043,243 (+)NCBI
Cytogenetic Map2p13.3NCBI
HuRef270,899,497 - 70,928,997 (+)NCBIHuRef
CHM1_1271,092,347 - 71,121,872 (+)NCBICHM1_1
Atp6v1b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,719,999 - 83,735,837 (+)NCBIGRCm39mm39
GRCm39 Ensembl683,719,972 - 83,735,837 (+)Ensembl
GRCm38683,743,017 - 83,758,855 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,742,990 - 83,758,855 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,693,011 - 83,708,804 (+)NCBIGRCm37mm9NCBIm37
MGSCv36683,708,675 - 83,724,468 (+)NCBImm8
Celera685,725,645 - 85,742,032 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
Atp6v1b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24116,223,799 - 116,242,475 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl4115,416,580 - 115,437,206 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04115,417,100 - 115,435,754 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04180,004,952 - 180,024,878 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,931,972 - 117,950,626 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14118,176,425 - 118,194,509 (+)NCBI
Celera4105,216,251 - 105,234,921 (+)NCBICelera
Cytogenetic Map4q34NCBI
ATP6V1B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A72,113,863 - 72,143,524 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A72,113,859 - 72,143,612 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A71,000,096 - 71,030,306 (+)NCBIMhudiblu_PPA_v0panPan3
ATP6V1B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11069,261,311 - 69,287,540 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1069,252,926 - 69,287,542 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1069,150,000 - 69,176,357 (+)NCBI
ROS_Cfam_1.01070,284,983 - 70,311,344 (+)NCBI
UMICH_Zoey_3.11070,008,448 - 70,034,801 (+)NCBI
UNSW_CanFamBas_1.01070,265,123 - 70,291,413 (+)NCBI
UU_Cfam_GSD_1.01070,570,051 - 70,596,395 (+)NCBI
Atp6v1b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629213,431,918 - 13,458,890 (-)NCBI
SpeTri2.0NW_00493649115,112,422 - 15,138,716 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl371,560,738 - 71,591,856 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1371,560,102 - 71,591,885 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2375,019,974 - 75,027,732 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11436,149,074 - 36,179,145 (-)NCBI
ChlSab1.1 Ensembl1436,149,006 - 36,177,671 (-)Ensembl
Vero_WHO_p1.0NW_02366604575,844,812 - 75,873,514 (+)NCBI
Atp6v1b1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247622,445,840 - 2,480,377 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010424   ⟹   ENSCLAP00000010294
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542414,256,096 - 14,282,410 (-)Ensembl
RefSeq Acc Id: XM_005385605   ⟹   XP_005385662
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542414,256,096 - 14,281,572 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005385662 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005385662   ⟸   XM_005385605
- Sequence:
RefSeq Acc Id: ENSCLAP00000010294   ⟸   ENSCLAT00000010424


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007116 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000010294 ENTREZGENE
Ensembl Transcript ENSCLAT00000010424 ENTREZGENE
NCBI Gene Atp6v1b1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Atp6v1b1  ATPase H+ transporting V1 subunit B1    ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B1  Symbol and/or name change 5135510 APPROVED