Hs6st1 (heparan sulfate 6-O-sulfotransferase 1) - Rat Genome Database

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Gene: Hs6st1 (heparan sulfate 6-O-sulfotransferase 1) Chinchilla lanigera
Analyze
Symbol: Hs6st1
Name: heparan sulfate 6-O-sulfotransferase 1
RGD ID: 8758405
Description: ENCODES a protein that exhibits heparan sulfate 6-O-sulfotransferase activity (ortholog); INVOLVED IN angiogenesis (ortholog); heparan sulfate proteoglycan biosynthetic process (ortholog); heparan sulfate proteoglycan biosynthetic process, enzymatic modification (ortholog); ASSOCIATED WITH autosomal dominant thrombophilia due to protein C deficiency (ortholog); genetic disease (ortholog); hypogonadotropic hypogonadism (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heparan-sulfate 6-O-sulfotransferase 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554592,273,100 - 2,310,993 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554592,273,100 - 2,310,993 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hs6st1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554592,273,100 - 2,310,993 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554592,273,100 - 2,310,993 (+)NCBIChiLan1.0ChiLan1.0
HS6ST1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382128,265,480 - 128,318,868 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2128,236,716 - 128,318,868 (-)EnsemblGRCh38hg38GRCh38
GRCh372129,023,054 - 129,076,442 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362128,739,524 - 128,792,641 (-)NCBINCBI36Build 36hg18NCBI36
Build 342128,741,261 - 128,792,482NCBI
Celera2122,329,574 - 122,382,723 (-)NCBICelera
Cytogenetic Map2q14.3NCBI
HuRef2121,328,848 - 121,381,981 (-)NCBIHuRef
CHM1_12129,027,954 - 129,081,083 (-)NCBICHM1_1
T2T-CHM13v2.02128,701,428 - 128,754,817 (-)NCBIT2T-CHM13v2.0
Hs6st1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39136,107,481 - 36,145,527 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl136,107,481 - 36,145,527 (+)EnsemblGRCm39 Ensembl
GRCm38136,068,400 - 36,106,446 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl136,068,400 - 36,106,446 (+)EnsemblGRCm38mm10GRCm38
MGSCv37136,125,245 - 36,163,291 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36136,012,955 - 36,050,992 (+)NCBIMGSCv36mm8
Celera135,889,714 - 35,892,649 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.15NCBI
Hs6st1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8945,779,402 - 45,818,583 (+)NCBIGRCr8
mRatBN7.2938,283,502 - 38,322,684 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl938,282,395 - 38,322,683 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx946,795,631 - 46,834,590 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0951,902,313 - 51,941,492 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0950,184,213 - 50,223,394 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0942,620,006 - 42,659,184 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl942,620,006 - 42,659,184 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0942,274,321 - 42,313,302 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4934,978,441 - 35,018,289 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1934,979,565 - 35,017,486 (+)NCBI
Celera936,051,788 - 36,090,818 (+)NCBICelera
Cytogenetic Map9q21NCBI
HS6ST1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21347,317,982 - 47,374,840 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B47,332,967 - 47,389,816 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B31,949,260 - 32,002,848 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B128,935,748 - 128,961,536 (-)NCBIpanpan1.1PanPan1.1panPan2
HS6ST1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11922,343,193 - 22,372,464 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1922,368,942 - 22,369,652 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1922,577,736 - 22,619,406 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01923,659,352 - 23,701,027 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11922,312,680 - 22,354,323 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01922,556,307 - 22,597,954 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01923,687,676 - 23,729,328 (+)NCBIUU_Cfam_GSD_1.0
Hs6st1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530398,531,679 - 98,578,226 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646943,039,488 - 43,087,768 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646943,039,494 - 43,086,041 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HS6ST1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1559,066,604 - 59,108,772 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11559,066,448 - 59,108,780 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21565,657,113 - 65,699,333 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HS6ST1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1101,918,019 - 1,971,060 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl101,918,154 - 1,971,610 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606120,804,220 - 20,857,695 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hs6st1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473217,209,984 - 17,250,358 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473217,210,315 - 17,249,930 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000006214   ⟹   ENSCLAP00000006111
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554592,273,100 - 2,310,993 (+)Ensembl
RefSeq Acc Id: XM_005397559   ⟹   XP_005397616
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554592,273,100 - 2,310,993 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005397616 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000006111
  ENSCLAP00000006111.1
Reference Protein Sequences
RefSeq Acc Id: XP_005397616   ⟸   XM_005397559
- UniProtKB: A0A8C2UYG2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000006111   ⟸   ENSCLAT00000006214


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004326 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000006214 ENTREZGENE
  ENSCLAT00000006214.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro Heparan_SO4-6-sulfoTrfase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase UniProtKB/TrEMBL
NCBI Gene Hs6st1 ENTREZGENE
PANTHER HEPARAN-SULFATE 6-O-SULFOTRANSFERASE 1 UniProtKB/TrEMBL
  PTHR12812 UniProtKB/TrEMBL
Pfam Sulfotransfer_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2UYG2 ENTREZGENE, UniProtKB/TrEMBL