Mgat4a (alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Mgat4a (alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A) Chinchilla lanigera
Analyze
Symbol: Mgat4a
Name: alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A
RGD ID: 8758111
Description: ENCODES a protein that exhibits acetylglucosaminyltransferase activity (ortholog); alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity (ortholog); glycosyltransferase activity (ortholog); INVOLVED IN N-glycan processing (ortholog); protein glycosylation (ortholog); protein N-linked glycosylation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); pancreatic cancer (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554705,065,656 - 5,189,060 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554705,060,457 - 5,189,021 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Mgat4a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554705,065,656 - 5,189,060 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554705,060,457 - 5,189,021 (-)NCBIChiLan1.0ChiLan1.0
MGAT4A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38298,619,106 - 98,731,132 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl298,619,106 - 98,731,132 (-)EnsemblGRCh38hg38GRCh38
GRCh37299,235,569 - 99,347,595 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36298,602,001 - 98,714,021 (-)NCBINCBI36Build 36hg18NCBI36
Build 34298,700,174 - 98,801,448NCBI
Celera293,439,294 - 93,552,735 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef293,000,157 - 93,109,090 (-)NCBIHuRef
CHM1_1299,239,892 - 99,347,374 (-)NCBICHM1_1
T2T-CHM13v2.0299,077,498 - 99,189,568 (-)NCBIT2T-CHM13v2.0
Mgat4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,478,421 - 37,580,599 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,478,421 - 37,580,097 (-)EnsemblGRCm39 Ensembl
GRCm38137,439,340 - 37,541,060 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,439,340 - 37,541,016 (-)EnsemblGRCm38mm10GRCm38
MGSCv37137,496,185 - 37,593,104 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,389,102 - 37,480,678 (-)NCBIMGSCv36mm8
Celera137,221,146 - 37,318,376 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.46NCBI
Mgat4a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8947,169,229 - 47,282,577 (-)NCBIGRCr8
mRatBN7.2939,673,427 - 39,786,747 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl939,673,430 - 39,766,890 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx948,169,491 - 48,262,980 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,292,241 - 53,385,733 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0951,574,110 - 51,667,584 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0944,033,433 - 44,126,946 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl944,033,436 - 44,126,919 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0943,734,661 - 43,847,624 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4936,384,072 - 36,477,938 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1936,390,707 - 36,474,910 (-)NCBI
Celera937,427,682 - 37,516,621 (-)NCBICelera
Cytogenetic Map9q21NCBI
MGAT4A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21229,705,970 - 29,825,506 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A29,708,732 - 29,828,268 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,573,320 - 100,692,840 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A99,527,418 - 99,641,579 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A99,533,831 - 99,641,579 (-)Ensemblpanpan1.1panPan2
MGAT4A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11043,931,642 - 44,057,156 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1043,931,673 - 44,080,347 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1043,852,998 - 43,979,153 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01044,803,200 - 44,929,672 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1044,803,793 - 44,954,046 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,513,960 - 44,640,091 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01044,804,708 - 44,926,859 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01044,980,550 - 45,106,776 (+)NCBIUU_Cfam_GSD_1.0
Mgat4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,457,430 - 84,530,413 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367441,715,898 - 1,765,879 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367441,710,392 - 1,783,356 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MGAT4A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,560,118 - 55,666,193 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1355,560,076 - 55,667,221 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2358,112,175 - 58,214,742 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MGAT4A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,339,509 - 2,457,872 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,340,567 - 2,453,853 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041169,859,318 - 169,987,907 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mgat4a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247493,661,108 - 3,775,609 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247493,656,181 - 3,775,619 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004598   ⟹   ENSCLAP00000004513
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554705,065,656 - 5,189,060 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000004599   ⟹   ENSCLAP00000004514
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554705,065,656 - 5,170,069 (-)Ensembl
RefSeq Acc Id: XM_013522736   ⟹   XP_013378190
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554705,060,457 - 5,189,021 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522737   ⟹   XP_013378191
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554705,060,457 - 5,169,580 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522739   ⟹   XP_013378193
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554705,065,817 - 5,189,021 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013378190 (Get FASTA)   NCBI Sequence Viewer  
  XP_013378191 (Get FASTA)   NCBI Sequence Viewer  
  XP_013378193 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004513
  ENSCLAP00000004513.1
  ENSCLAP00000004514
  ENSCLAP00000004514.1
Reference Protein Sequences
RefSeq Acc Id: XP_013378190   ⟸   XM_013522736
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UXA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013378191   ⟸   XM_013522737
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UXA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013378193   ⟸   XM_013522739
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000004513   ⟸   ENSCLAT00000004598
RefSeq Acc Id: ENSCLAP00000004514   ⟸   ENSCLAT00000004599


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003213 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004598 ENTREZGENE
  ENSCLAT00000004598.1 UniProtKB/TrEMBL
  ENSCLAT00000004599 ENTREZGENE
  ENSCLAT00000004599.1 UniProtKB/TrEMBL
InterPro Glyco_transf_54 UniProtKB/TrEMBL
NCBI Gene Mgat4a ENTREZGENE
PANTHER ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 4-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE A UniProtKB/TrEMBL
  PTHR12062 UniProtKB/TrEMBL
Pfam Glyco_transf_54 UniProtKB/TrEMBL
UniProt A0A8C2UXA3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-26 Mgat4a  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A    mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A  Symbol and/or name change 5135510 APPROVED